Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm6736-201ENSMUST00000166583 948 ntBASIC15.29■□□□□ 0.04
Col5a1O88207 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC15.29■□□□□ 0.04
Col5a1O88207 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col5a1O88207 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Col5a1O88207 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Col5a1O88207 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col5a1O88207 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC15.28■□□□□ 0.04
Col5a1O88207 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC15.28■□□□□ 0.04
Col5a1O88207 Gm12350-201ENSMUST00000121208 462 ntBASIC15.28■□□□□ 0.04
Col5a1O88207 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC15.28■□□□□ 0.04
Col5a1O88207 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Col5a1O88207 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col5a1O88207 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Col5a1O88207 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC15.27■□□□□ 0.04
Col5a1O88207 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col5a1O88207 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Col5a1O88207 Zkscan4-202ENSMUST00000225845 1506 ntBASIC15.27■□□□□ 0.03
Col5a1O88207 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Col5a1O88207 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.27■□□□□ 0.03
Col5a1O88207 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC15.27■□□□□ 0.03
Col5a1O88207 Cmtm5-203ENSMUST00000227441 610 ntBASIC15.27■□□□□ 0.03
Col5a1O88207 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC15.27■□□□□ 0.03
Col5a1O88207 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col5a1O88207 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col5a1O88207 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.26■□□□□ 0.03
Col5a1O88207 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC15.26■□□□□ 0.03
Col5a1O88207 Gm15372-201ENSMUST00000120729 834 ntBASIC15.26■□□□□ 0.03
Col5a1O88207 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.26■□□□□ 0.03
Col5a1O88207 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col5a1O88207 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC15.25■□□□□ 0.03
Col5a1O88207 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
Col5a1O88207 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC15.25■□□□□ 0.03
Col5a1O88207 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.25■□□□□ 0.03
Col5a1O88207 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col5a1O88207 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Rarb-207ENSMUST00000225921 2756 ntBASIC15.25■□□□□ 0.03
Col5a1O88207 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col5a1O88207 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col5a1O88207 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col5a1O88207 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC15.24■□□□□ 0.03
Col5a1O88207 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms