Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Reep4-203ENSMUST00000226563 1444 ntBASIC14.13□□□□□ -0.15
Hmgb3O54879 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC14.13□□□□□ -0.15
Hmgb3O54879 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Hmgb3O54879 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Hmgb3O54879 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Hmgb3O54879 Gm22325-201ENSMUST00000158904 308 ntBASIC14.12□□□□□ -0.15
Hmgb3O54879 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC14.12□□□□□ -0.15
Hmgb3O54879 Gm43017-201ENSMUST00000198296 752 ntBASIC14.12□□□□□ -0.15
Hmgb3O54879 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Hmgb3O54879 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Hmgb3O54879 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC14.12□□□□□ -0.15
Hmgb3O54879 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC14.12□□□□□ -0.15
Hmgb3O54879 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Hmgb3O54879 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hmgb3O54879 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Gm16401-202ENSMUST00000197463 2074 ntBASIC14.11□□□□□ -0.15
Hmgb3O54879 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Gm43034-201ENSMUST00000198678 1364 ntBASIC14.11□□□□□ -0.15
Hmgb3O54879 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC14.11□□□□□ -0.15
Hmgb3O54879 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Gm13241-201ENSMUST00000094493 780 ntBASIC14.11□□□□□ -0.15
Hmgb3O54879 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Hmgb3O54879 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Hmgb3O54879 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Hmgb3O54879 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Hmgb3O54879 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 AC125311.2-201ENSMUST00000227477 1940 ntBASIC14.1□□□□□ -0.15
Hmgb3O54879 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Gm6139-201ENSMUST00000079261 882 ntBASIC14.1□□□□□ -0.15
Hmgb3O54879 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Hmgb3O54879 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Hmgb3O54879 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hmgb3O54879 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Gm37166-201ENSMUST00000195473 2474 ntBASIC14.09□□□□□ -0.15
Hmgb3O54879 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC14.09□□□□□ -0.15
Hmgb3O54879 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms