Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Traj52-201ENSMUST00000103691 66 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
ShhQ62226 Gm26082-201ENSMUST00000104070 127 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Mir1298-201ENSMUST00000116681 98 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm13922-201ENSMUST00000119505 156 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm24001-201ENSMUST00000158463 85 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm26403-201ENSMUST00000158500 105 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Mir1966-201ENSMUST00000158807 108 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm16546-201ENSMUST00000159442 355 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm22129-201ENSMUST00000179034 107 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm5900-201ENSMUST00000179862 375 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm23410-201ENSMUST00000179967 107 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm22756-201ENSMUST00000180118 107 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Mir6950-201ENSMUST00000184438 73 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm28794-201ENSMUST00000185276 136 ntBASIC1.72□□□□□ -2.13
ShhQ62226 AC154282.1-201ENSMUST00000223154 265 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm22306-201ENSMUST00000082692 107 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm22505-201ENSMUST00000082956 108 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm22363-201ENSMUST00000083100 108 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm23814-201ENSMUST00000083230 102 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Gm23095-201ENSMUST00000083446 107 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Mir490-201ENSMUST00000093567 84 ntBASIC1.72□□□□□ -2.13
ShhQ62226 Vmn1r75-205ENSMUST00000228268 4376 ntAPPRIS ALT2 BASIC1.72□□□□□ -2.13
ShhQ62226 Gm23578-201ENSMUST00000103943 104 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm25090-201ENSMUST00000104000 132 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm26018-201ENSMUST00000104406 128 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm13246-201ENSMUST00000120994 315 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm24478-201ENSMUST00000157439 158 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm22967-201ENSMUST00000157956 239 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm26360-201ENSMUST00000158872 103 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm17215-201ENSMUST00000170074 277 ntTSL 3 BASIC1.71□□□□□ -2.14
ShhQ62226 Gm27544-201ENSMUST00000185069 155 ntBASIC1.71□□□□□ -2.14
ShhQ62226 AC150901.1-201ENSMUST00000208407 145 ntBASIC1.71□□□□□ -2.14
ShhQ62226 AC165138.1-201ENSMUST00000226984 270 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Gm25697-201ENSMUST00000082902 98 ntBASIC1.71□□□□□ -2.14
ShhQ62226 Agmo-201ENSMUST00000049874 2423 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
ShhQ62226 Olfr790-203ENSMUST00000215067 2659 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
ShhQ62226 Snord100-201ENSMUST00000116836 74 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm15067-201ENSMUST00000119534 156 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm15281-201ENSMUST00000125181 351 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm15692-201ENSMUST00000152173 352 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm22228-201ENSMUST00000157364 101 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm24783-201ENSMUST00000157639 100 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm23208-201ENSMUST00000158666 127 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm27722-201ENSMUST00000183908 76 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Mir6419-201ENSMUST00000184784 113 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm44338-201ENSMUST00000198614 110 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm22743-201ENSMUST00000083445 133 ntBASIC1.7□□□□□ -2.14
ShhQ62226 Gm24171-201ENSMUST00000104126 131 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm22545-201ENSMUST00000104350 132 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm15069-201ENSMUST00000117792 192 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm15068-201ENSMUST00000119796 192 ntBASIC1.69□□□□□ -2.14
ShhQ62226 n-R5s188-201ENSMUST00000122646 105 ntBASIC1.69□□□□□ -2.14
ShhQ62226 U6.1-201ENSMUST00000157443 101 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm25882-201ENSMUST00000157784 85 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm23760-201ENSMUST00000158350 116 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm23181-201ENSMUST00000158685 110 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm27511-201ENSMUST00000183502 127 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm27672-201ENSMUST00000183751 204 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm29603-201ENSMUST00000186792 334 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm28409-201ENSMUST00000187064 103 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm37116-201ENSMUST00000195161 147 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm44464-201ENSMUST00000198010 138 ntBASIC1.69□□□□□ -2.14
ShhQ62226 AC144671.1-201ENSMUST00000215265 99 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm23678-201ENSMUST00000083157 107 ntBASIC1.69□□□□□ -2.14
ShhQ62226 Gm25274-201ENSMUST00000104296 135 ntBASIC1.68□□□□□ -2.14
ShhQ62226 Gm15404-201ENSMUST00000141811 364 ntTSL 2 BASIC1.68□□□□□ -2.14
ShhQ62226 Gm22612-201ENSMUST00000158293 101 ntBASIC1.68□□□□□ -2.14
ShhQ62226 Mir3968-201ENSMUST00000175355 100 ntBASIC1.68□□□□□ -2.14
ShhQ62226 Gm22699-201ENSMUST00000175376 105 ntBASIC1.68□□□□□ -2.14
ShhQ62226 Gm27668-201ENSMUST00000184188 120 ntBASIC1.68□□□□□ -2.14
ShhQ62226 Ighv15-1-201ENSMUST00000194450 276 ntBASIC1.68□□□□□ -2.14
ShhQ62226 Gm43602-201ENSMUST00000196772 300 ntBASIC1.68□□□□□ -2.14
ShhQ62226 1700014F14Rik-201ENSMUST00000199566 197 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
ShhQ62226 Gm22761-201ENSMUST00000102278 96 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Gm23172-201ENSMUST00000157160 124 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Gm24559-201ENSMUST00000157519 121 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Gm26415-201ENSMUST00000157673 292 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Gm23080-201ENSMUST00000157846 103 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Gm25558-201ENSMUST00000158083 106 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Gm17364-201ENSMUST00000163881 72 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
ShhQ62226 Mir6240-201ENSMUST00000184281 117 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Gm24151-201ENSMUST00000082758 141 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Mir200b-201ENSMUST00000083615 70 ntBASIC1.67□□□□□ -2.14
ShhQ62226 Olfr1154-202ENSMUST00000215017 2917 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
ShhQ62226 Zfp600-201ENSMUST00000092750 4154 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
ShhQ62226 Gm13345-201ENSMUST00000121928 228 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Gm24054-201ENSMUST00000158619 105 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Mir3057-201ENSMUST00000175040 91 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Gm24366-201ENSMUST00000175383 86 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Gm25730-201ENSMUST00000178753 165 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Gm27894-201ENSMUST00000184177 92 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Mir7665-201ENSMUST00000184907 63 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Cr2-206ENSMUST00000193801 206 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
ShhQ62226 AC153646.2-201ENSMUST00000220516 109 ntBASIC1.66□□□□□ -2.14
ShhQ62226 CT030645.1-201ENSMUST00000224020 231 ntBASIC1.66□□□□□ -2.14
ShhQ62226 AC101945.1-201ENSMUST00000226734 466 ntBASIC1.66□□□□□ -2.14
ShhQ62226 Gm26074-201ENSMUST00000104063 129 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm14567-201ENSMUST00000117155 174 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm14882-201ENSMUST00000117216 218 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm24902-201ENSMUST00000158126 123 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 76,532 protein–RNA pairs in 89.8 ms