Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm25882-201ENSMUST00000157784 85 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm24747-201ENSMUST00000157835 87 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm26084-201ENSMUST00000157903 104 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm23342-201ENSMUST00000158958 115 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm20438-201ENSMUST00000174441 329 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Mir7016-201ENSMUST00000184308 72 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Trav7-6-202ENSMUST00000184687 275 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm44976-201ENSMUST00000205543 261 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm23445-201ENSMUST00000082800 107 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm23246-201ENSMUST00000083371 67 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm22738-201ENSMUST00000083440 147 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm25409-201ENSMUST00000083764 131 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Snora2b-201ENSMUST00000084005 137 ntBASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Gm21876-201ENSMUST00000096511 282 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
Col28a1Q2UY11 Olfr479-202ENSMUST00000209805 2902 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Zfy2-201ENSMUST00000115891 2816 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Snord100-201ENSMUST00000116836 74 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm23469-201ENSMUST00000157131 104 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm25113-201ENSMUST00000157185 143 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm26105-201ENSMUST00000157253 190 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm23381-201ENSMUST00000157676 94 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm23858-201ENSMUST00000158384 106 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm22159-201ENSMUST00000158412 130 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm24634-201ENSMUST00000158672 107 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm23504-201ENSMUST00000158988 95 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Trav5n-3-201ENSMUST00000164511 270 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm27991-201ENSMUST00000184804 137 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm44308-201ENSMUST00000197080 99 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Ptp4a1-206ENSMUST00000202889 135 ntTSL 2 BASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm44666-201ENSMUST00000208544 391 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm19118-201ENSMUST00000222554 98 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm24615-201ENSMUST00000083268 113 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Mir201-201ENSMUST00000083470 66 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm43706-201ENSMUST00000198767 2652 ntBASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Olfr1153-202ENSMUST00000217436 2144 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Olfr576-201ENSMUST00000098213 3132 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Tlr8-202ENSMUST00000112170 3431 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
Col28a1Q2UY11 Gm45461-201ENSMUST00000211726 4535 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Olfr1208-202ENSMUST00000214121 2823 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
Col28a1Q2UY11 n-R5s158-201ENSMUST00000104095 118 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm23010-201ENSMUST00000104151 126 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm24598-201ENSMUST00000122510 74 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm25323-201ENSMUST00000122555 103 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 n-R5s159-201ENSMUST00000122681 120 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm24237-201ENSMUST00000157790 132 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm22551-201ENSMUST00000157795 103 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm24770-201ENSMUST00000158505 92 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm42719-201ENSMUST00000197393 355 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm43381-201ENSMUST00000198553 165 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Gm45456-201ENSMUST00000210841 243 ntBASIC1.96□□□□□ -2.1
Col28a1Q2UY11 Mir374b-201ENSMUST00000102314 95 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Scgb1b23-ps-201ENSMUST00000116009 252 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Gm25828-201ENSMUST00000157087 95 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Gm24390-201ENSMUST00000179578 62 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 1700112D23Rik-202ENSMUST00000193387 299 ntTSL 2 BASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Gm44358-201ENSMUST00000196301 98 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Gm44482-201ENSMUST00000199232 103 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Gm42844-201ENSMUST00000200355 112 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Gm8219-201ENSMUST00000218309 242 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 AC129085.5-201ENSMUST00000225468 400 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Mir466-201ENSMUST00000093591 73 ntBASIC1.95□□□□□ -2.1
Col28a1Q2UY11 Gm43753-201ENSMUST00000196539 3309 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Snord64-201ENSMUST00000104003 67 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm22494-201ENSMUST00000104495 128 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm12086-201ENSMUST00000120863 228 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm24911-201ENSMUST00000157292 136 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm23043-201ENSMUST00000157890 109 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm24510-201ENSMUST00000174965 94 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm25380-201ENSMUST00000175463 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm24641-201ENSMUST00000178055 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm25484-201ENSMUST00000178217 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm26138-201ENSMUST00000179236 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm22821-201ENSMUST00000179288 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm27668-201ENSMUST00000184188 120 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm25820-201ENSMUST00000198589 127 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm23140-201ENSMUST00000082487 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm24044-201ENSMUST00000083107 156 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm23298-201ENSMUST00000083181 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm24614-201ENSMUST00000083269 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm22057-201ENSMUST00000083387 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm25006-201ENSMUST00000083813 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm25516-201ENSMUST00000083857 107 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm25513-201ENSMUST00000083861 162 ntBASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Gm45518-201ENSMUST00000210776 2583 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
Col28a1Q2UY11 Olfr1029-202ENSMUST00000217244 3743 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm14567-201ENSMUST00000117155 174 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm12865-201ENSMUST00000137353 326 ntTSL 2 BASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm45886-201ENSMUST00000148141 342 ntTSL 5 BASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm25825-201ENSMUST00000157091 124 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm25889-201ENSMUST00000157775 107 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm22554-201ENSMUST00000157798 147 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm25488-201ENSMUST00000158728 118 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm22070-201ENSMUST00000178475 107 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Mir7039-201ENSMUST00000183852 85 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm25636-201ENSMUST00000082666 133 ntBASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Olfr1450-202ENSMUST00000213587 2872 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm36669-201ENSMUST00000201757 3650 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
Col28a1Q2UY11 Gm26091-201ENSMUST00000122704 82 ntBASIC1.92□□□□□ -2.1
Col28a1Q2UY11 Gm25623-201ENSMUST00000157216 108 ntBASIC1.92□□□□□ -2.1
Col28a1Q2UY11 Gm22665-201ENSMUST00000158720 275 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 76,532 protein–RNA pairs in 170 ms