| Hoxd9 | P28357 | Mir3092-201 | ENSMUST00000174954 | 96 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm28002-201 | ENSMUST00000184832 | 100 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Tex16-201 | ENSMUST00000038546 | 3972 nt | APPRIS P2 TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Pak3-202 | ENSMUST00000112863 | 8657 nt | APPRIS ALT1 TSL 5 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Tlr3-202 | ENSMUST00000167106 | 4093 nt | APPRIS P1 TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm37928-201 | ENSMUST00000193265 | 4131 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm9696-201 | ENSMUST00000094227 | 3050 nt | TSL 2 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm25090-201 | ENSMUST00000104000 | 132 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm26077-201 | ENSMUST00000104064 | 123 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm24126-201 | ENSMUST00000104111 | 106 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm14882-201 | ENSMUST00000117216 | 218 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm9009-201 | ENSMUST00000117321 | 326 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm26425-201 | ENSMUST00000122529 | 82 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm26477-201 | ENSMUST00000122617 | 323 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm14389-201 | ENSMUST00000140453 | 241 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm24649-201 | ENSMUST00000157106 | 134 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Mir3103-201 | ENSMUST00000175474 | 67 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm24573-201 | ENSMUST00000175499 | 112 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm26061-201 | ENSMUST00000175584 | 108 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm7258-201 | ENSMUST00000179317 | 300 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Mir6402-201 | ENSMUST00000183406 | 80 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | AC140930.2-201 | ENSMUST00000221803 | 109 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm9370-201 | ENSMUST00000222787 | 609 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm23293-201 | ENSMUST00000082552 | 104 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Olfr849-202 | ENSMUST00000217273 | 6140 nt | APPRIS P1 TSL 5 BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Slain1os-201 | ENSMUST00000160117 | 3101 nt | TSL 1 (best) BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm37515-201 | ENSMUST00000193321 | 3817 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Ifi209-201 | ENSMUST00000056071 | 3439 nt | APPRIS P1 TSL 1 (best) BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm22023-201 | ENSMUST00000104354 | 130 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm15466-201 | ENSMUST00000122299 | 333 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Zfp969-202 | ENSMUST00000131041 | 252 nt | TSL 2 BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm23588-201 | ENSMUST00000157659 | 99 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Mir3470b-201 | ENSMUST00000175563 | 126 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm26297-201 | ENSMUST00000179464 | 132 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Mir8096-201 | ENSMUST00000184526 | 127 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Mir6405-201 | ENSMUST00000184584 | 124 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Snhg14-203 | ENSMUST00000185815 | 670 nt | TSL 5 BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Olfr65-201 | ENSMUST00000106864 | 2648 nt | APPRIS ALT1 TSL 5 BASIC | 2.92 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm25680-201 | ENSMUST00000116917 | 126 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm22635-201 | ENSMUST00000116962 | 126 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm11749-201 | ENSMUST00000127327 | 184 nt | TSL 2 BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm24250-201 | ENSMUST00000157320 | 135 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm23826-201 | ENSMUST00000157394 | 119 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm24138-201 | ENSMUST00000157572 | 114 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm23381-201 | ENSMUST00000157676 | 94 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Mir5619-201 | ENSMUST00000176065 | 61 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm23770-201 | ENSMUST00000178009 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm22832-201 | ENSMUST00000178022 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm23863-201 | ENSMUST00000178265 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm24828-201 | ENSMUST00000178507 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm23052-201 | ENSMUST00000178633 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm25729-201 | ENSMUST00000179050 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm25359-201 | ENSMUST00000179315 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm22624-201 | ENSMUST00000179913 | 108 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Dmd-203 | ENSMUST00000114000 | 14910 nt | APPRIS P1 TSL 1 (best) BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Olfr576-201 | ENSMUST00000098213 | 3132 nt | APPRIS P1 TSL 5 BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | 4932412D23Rik-203 | ENSMUST00000142270 | 4105 nt | TSL 1 (best) BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Zfp984-201 | ENSMUST00000105734 | 2729 nt | APPRIS P1 TSL 3 BASIC | 2.91 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm37158-201 | ENSMUST00000191652 | 5704 nt | BASIC | 2.9 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Stap1-206 | ENSMUST00000198435 | 3350 nt | APPRIS P1 TSL 1 (best) BASIC | 2.9 | □□□□□ -1.94 | | |
| Hoxd9 | P28357 | Gm22187-201 | ENSMUST00000157819 | 129 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm44482-201 | ENSMUST00000199232 | 103 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | 1700010L04Rik-201 | ENSMUST00000032872 | 330 nt | TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Cdk13-205 | ENSMUST00000222800 | 3858 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.9 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm14937-201 | ENSMUST00000119709 | 208 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm13656-201 | ENSMUST00000123829 | 345 nt | TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm27527-201 | ENSMUST00000183903 | 99 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Hmgb1l-201 | ENSMUST00000082150 | 571 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm23738-201 | ENSMUST00000082828 | 171 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gabra2-203 | ENSMUST00000197284 | 5852 nt | APPRIS P1 TSL 1 (best) BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm38083-201 | ENSMUST00000194758 | 3498 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Olfr881-202 | ENSMUST00000212489 | 4237 nt | APPRIS P1 TSL 3 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm45257-201 | ENSMUST00000210301 | 3998 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Mir8103-201 | ENSMUST00000183945 | 107 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm43879-201 | ENSMUST00000203811 | 3760 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Olfr1161-203 | ENSMUST00000217006 | 3647 nt | APPRIS P1 TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm13136-201 | ENSMUST00000121031 | 2950 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Olfr1256-204 | ENSMUST00000215613 | 4543 nt | APPRIS P1 TSL 3 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Olfr1447-203 | ENSMUST00000216989 | 2586 nt | APPRIS P1 TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Ppp4r3c-ps-201 | ENSMUST00000151416 | 2445 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm25485-201 | ENSMUST00000104120 | 132 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm11356-201 | ENSMUST00000118974 | 192 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm22322-201 | ENSMUST00000157151 | 111 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm22332-201 | ENSMUST00000158072 | 126 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Traj61-201 | ENSMUST00000165025 | 72 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm24674-201 | ENSMUST00000179194 | 104 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm44734-201 | ENSMUST00000206025 | 237 nt | TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm45027-201 | ENSMUST00000207081 | 78 nt | TSL 3 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm31450-201 | ENSMUST00000220668 | 132 nt | TSL 2 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | S100z-201 | ENSMUST00000022186 | 399 nt | APPRIS P1 TSL 1 (best) BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | AC098718.1-201 | ENSMUST00000226166 | 175 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm26441-201 | ENSMUST00000082590 | 104 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | AC158979.1-201 | ENSMUST00000223594 | 2252 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm8935-201 | ENSMUST00000066794 | 2798 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Olfr609-202 | ENSMUST00000216075 | 3429 nt | APPRIS P1 TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Pak3-205 | ENSMUST00000112868 | 8163 nt | APPRIS P3 TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Olfr1437-202 | ENSMUST00000207241 | 3751 nt | APPRIS P1 TSL 2 BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm22939-201 | ENSMUST00000103958 | 131 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm22672-201 | ENSMUST00000104414 | 134 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxd9 | P28357 | Gm24632-201 | ENSMUST00000122770 | 323 nt | BASIC | 2.86 | □□□□□ -1.95 | | |