Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm25895-201ENSMUST00000083714 100 ntBASIC2.6□□□□□ -1.99
Ushbp1Q8R370 Skint6-202ENSMUST00000171224 3723 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
Ushbp1Q8R370 Gm45652-201ENSMUST00000210926 3831 ntBASIC2.6□□□□□ -1.99
Ushbp1Q8R370 Vmn1r78-202ENSMUST00000228244 7931 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
Ushbp1Q8R370 Tlr3-201ENSMUST00000034056 4407 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Gm27047-201ENSMUST00000183072 1819 ntBASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Gm22051-201ENSMUST00000117002 127 ntBASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Gm14491-201ENSMUST00000121919 199 ntBASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Gm23983-201ENSMUST00000157142 114 ntBASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Gm24131-201ENSMUST00000158539 107 ntBASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Gm24277-201ENSMUST00000158661 104 ntBASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Gm25996-201ENSMUST00000175393 117 ntBASIC2.59□□□□□ -1.99
Ushbp1Q8R370 Zfp638-212ENSMUST00000203891 3968 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
Ushbp1Q8R370 Rps15a-ps6-201ENSMUST00000117476 393 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm22606-201ENSMUST00000158290 103 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm16561-201ENSMUST00000163001 192 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Vmn2r-ps17-201ENSMUST00000178733 375 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm43749-201ENSMUST00000199345 352 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm2511-201ENSMUST00000205521 457 ntTSL 3 BASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm18213-201ENSMUST00000207850 178 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 AC154282.1-201ENSMUST00000223154 265 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 AC124182.1-201ENSMUST00000227091 321 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm25142-201ENSMUST00000082698 107 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm22866-201ENSMUST00000083947 177 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Gm43706-201ENSMUST00000198767 2652 ntBASIC2.58□□□□□ -2
Ushbp1Q8R370 Cd209e-201ENSMUST00000033888 1802 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm23015-201ENSMUST00000104145 128 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Snord89-201ENSMUST00000104516 110 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm26280-201ENSMUST00000157096 101 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm22517-201ENSMUST00000158265 136 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm24177-201ENSMUST00000158927 131 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm23005-201ENSMUST00000158950 136 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm6003-201ENSMUST00000187903 463 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Mir3069-201ENSMUST00000198802 65 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm43199-201ENSMUST00000200019 307 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm44408-201ENSMUST00000200205 66 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Gm45456-201ENSMUST00000210841 243 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 AC124104.1-201ENSMUST00000226279 417 ntBASIC2.57□□□□□ -2
Ushbp1Q8R370 Olfr777-202ENSMUST00000204573 5407 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm20438-201ENSMUST00000174441 329 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm26897-201ENSMUST00000180627 93 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm28434-201ENSMUST00000187738 500 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm37557-201ENSMUST00000191640 139 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm18546-201ENSMUST00000197245 676 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 Mir3961-201ENSMUST00000198795 59 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 AC163289.1-201ENSMUST00000215919 262 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm24313-201ENSMUST00000082561 133 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm24661-201ENSMUST00000083205 104 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 Gm24615-201ENSMUST00000083268 113 ntBASIC2.56□□□□□ -2
Ushbp1Q8R370 Olfr711-203ENSMUST00000216335 4724 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
Ushbp1Q8R370 C230088H06Rik-202ENSMUST00000181752 3010 ntTSL 5 BASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm22935-201ENSMUST00000103960 104 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm23950-201ENSMUST00000104026 129 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 n-R5s158-201ENSMUST00000104095 118 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm22149-201ENSMUST00000104442 136 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm12449-201ENSMUST00000117572 234 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm14914-201ENSMUST00000117576 2031 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm13913-201ENSMUST00000121126 260 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 2210418O10Rik-202ENSMUST00000135430 195 ntTSL 5 BASIC2.55□□□□□ -2
Ushbp1Q8R370 Igkv14-118-1-201ENSMUST00000198645 334 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 AC125167.1-201ENSMUST00000198698 141 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm44133-202ENSMUST00000204450 2586 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm25081-201ENSMUST00000082534 108 ntBASIC2.55□□□□□ -2
Ushbp1Q8R370 Gm36669-201ENSMUST00000201757 3650 ntTSL 1 (best) BASIC2.54□□□□□ -2
Ushbp1Q8R370 Olfr1442-202ENSMUST00000207341 3126 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
Ushbp1Q8R370 Skint5-202ENSMUST00000169631 4497 ntAPPRIS P5 TSL 1 (best) BASIC2.54□□□□□ -2
Ushbp1Q8R370 Gm15214-201ENSMUST00000122155 470 ntBASIC2.54□□□□□ -2
Ushbp1Q8R370 Gm25910-201ENSMUST00000157620 140 ntBASIC2.54□□□□□ -2
Ushbp1Q8R370 Gm23289-201ENSMUST00000175615 108 ntBASIC2.54□□□□□ -2
Ushbp1Q8R370 Mir7026-201ENSMUST00000184384 67 ntBASIC2.54□□□□□ -2
Ushbp1Q8R370 Gm43512-201ENSMUST00000198495 176 ntBASIC2.54□□□□□ -2
Ushbp1Q8R370 Olfr229-202ENSMUST00000214904 3125 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
Ushbp1Q8R370 Gm25938-201ENSMUST00000104139 166 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 Gm12941-201ENSMUST00000117934 220 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 Vmn1r-ps120-201ENSMUST00000120288 377 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 Gm25425-201ENSMUST00000157611 96 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 Gm24390-201ENSMUST00000179578 62 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 Gm7214-201ENSMUST00000222428 272 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 Hmgb1l-201ENSMUST00000082150 571 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 AC125374.3-201ENSMUST00000214983 2810 ntBASIC2.53□□□□□ -2
Ushbp1Q8R370 Gm45558-201ENSMUST00000209384 1895 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm24276-201ENSMUST00000102181 110 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm25915-201ENSMUST00000104265 126 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm6025-201ENSMUST00000121517 201 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm23655-201ENSMUST00000122627 105 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Mir1927-201ENSMUST00000158579 109 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm25716-201ENSMUST00000158628 104 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm17020-201ENSMUST00000172274 274 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm22510-201ENSMUST00000179304 79 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm26336-201ENSMUST00000179449 79 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Gm26390-201ENSMUST00000179628 79 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 AC154994.1-201ENSMUST00000217395 302 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 AC183096.2-201ENSMUST00000228733 457 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Mir423-201ENSMUST00000083584 109 ntBASIC2.52□□□□□ -2.01
Ushbp1Q8R370 Ifi203-209ENSMUST00000156895 3605 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
Ushbp1Q8R370 Gm26154-201ENSMUST00000102339 96 ntBASIC2.51□□□□□ -2.01
Ushbp1Q8R370 Gm24595-201ENSMUST00000122501 110 ntBASIC2.51□□□□□ -2.01
Ushbp1Q8R370 Gm22731-201ENSMUST00000158086 94 ntBASIC2.51□□□□□ -2.01
Ushbp1Q8R370 Gm25491-201ENSMUST00000158733 308 ntBASIC2.51□□□□□ -2.01
Ushbp1Q8R370 Gm23194-201ENSMUST00000158813 105 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 76,532 protein–RNA pairs in 192.5 ms