Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm22586-201ENSMUST00000157507 122 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm24900-201ENSMUST00000158128 134 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm3211-201ENSMUST00000172721 304 ntTSL 3 BASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm23190-201ENSMUST00000180307 64 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm37146-201ENSMUST00000192572 463 ntTSL 3 BASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Mir6925-201ENSMUST00000197857 70 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm44052-201ENSMUST00000203382 396 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm44478-201ENSMUST00000204875 114 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm20083-201ENSMUST00000205849 751 ntTSL 3 BASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm44564-201ENSMUST00000207985 180 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 AC158597.1-201ENSMUST00000216234 150 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 AC132221.1-201ENSMUST00000220577 3841 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm25589-201ENSMUST00000082502 166 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm24449-201ENSMUST00000083985 106 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Lipi-201ENSMUST00000062721 2082 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Olfr606-202ENSMUST00000214631 2649 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gpr174-204ENSMUST00000120971 3588 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gpr174-207ENSMUST00000178838 4955 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Mir344e-201ENSMUST00000104677 66 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gm25059-201ENSMUST00000157367 117 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gm24813-201ENSMUST00000175310 84 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gm25464-201ENSMUST00000175481 107 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gm43676-201ENSMUST00000197532 540 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gm45492-201ENSMUST00000211611 288 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 AC134601.1-201ENSMUST00000221058 109 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 AC122465.2-201ENSMUST00000221774 354 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Olfr1098-202ENSMUST00000111574 2885 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Olfr835-202ENSMUST00000213018 2690 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Olfr830-202ENSMUST00000212723 3105 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gm38255-201ENSMUST00000194910 2996 ntBASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Acer3-202ENSMUST00000120520 3964 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
Col28a1Q2UY11 Gm22477-201ENSMUST00000122569 316 ntBASIC2.15□□□□□ -2.07
Col28a1Q2UY11 Mir7226-201ENSMUST00000184953 60 ntBASIC2.15□□□□□ -2.07
Col28a1Q2UY11 Trav5-2-201ENSMUST00000199855 280 ntBASIC2.15□□□□□ -2.07
Col28a1Q2UY11 Olfr611-202ENSMUST00000216074 2301 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
Col28a1Q2UY11 Gm43046-201ENSMUST00000198771 2451 ntBASIC2.15□□□□□ -2.07
Col28a1Q2UY11 Gm45393-201ENSMUST00000211634 2631 ntBASIC2.15□□□□□ -2.07
Col28a1Q2UY11 Gm22382-201ENSMUST00000158185 130 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Gm25012-201ENSMUST00000158396 164 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Gm26157-201ENSMUST00000158974 126 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Gm5224-201ENSMUST00000183060 350 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Gm37377-201ENSMUST00000191733 304 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Gm9251-201ENSMUST00000197202 628 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 AC027184.1-201ENSMUST00000226991 424 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Mir125b-2-201ENSMUST00000083538 71 ntBASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Zfp988-201ENSMUST00000148762 2800 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
Col28a1Q2UY11 Gm26154-201ENSMUST00000102339 96 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm22193-201ENSMUST00000116868 76 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm25980-201ENSMUST00000157176 218 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm23048-201ENSMUST00000157237 129 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm22800-201ENSMUST00000175627 94 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm25020-201ENSMUST00000178071 107 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm37545-201ENSMUST00000186512 148 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Mir497-201ENSMUST00000200557 84 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm26493-201ENSMUST00000083155 136 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Mir322-201ENSMUST00000083484 95 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Mir186-201ENSMUST00000083497 71 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Snora69-201ENSMUST00000083708 131 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Nkain2-202ENSMUST00000092603 273 ntTSL 5 BASIC2.13□□□□□ -2.07
Col28a1Q2UY11 C230088H06Rik-202ENSMUST00000181752 3010 ntTSL 5 BASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm18751-201ENSMUST00000185777 2013 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 AC159625.1-201ENSMUST00000220994 2625 ntBASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Olfr1448-202ENSMUST00000213177 3979 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
Col28a1Q2UY11 Gm15314-201ENSMUST00000120740 1887 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm22003-201ENSMUST00000101885 107 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Snord90-201ENSMUST00000104568 111 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Atp5k-ps2-201ENSMUST00000120437 210 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm24480-201ENSMUST00000157442 103 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm23548-201ENSMUST00000158963 106 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm6788-201ENSMUST00000166459 270 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm22756-201ENSMUST00000180118 107 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Mir3569-201ENSMUST00000185080 58 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm2511-201ENSMUST00000205521 457 ntTSL 3 BASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm8508-201ENSMUST00000061226 363 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm26054-201ENSMUST00000083037 107 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm24492-201ENSMUST00000083798 107 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Gm22681-201ENSMUST00000083853 106 ntBASIC2.12□□□□□ -2.07
Col28a1Q2UY11 Tlr7-201ENSMUST00000060719 3776 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Olfr1201-203ENSMUST00000216213 2602 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm14626-201ENSMUST00000117619 216 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm15214-201ENSMUST00000122155 470 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm24717-201ENSMUST00000157522 124 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm24010-201ENSMUST00000157731 282 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm23194-201ENSMUST00000158813 105 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm26160-201ENSMUST00000158965 63 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Mir6997-201ENSMUST00000184313 71 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm28409-201ENSMUST00000187064 103 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Mir3969-201ENSMUST00000197106 92 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Mir1291-201ENSMUST00000199842 117 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm22686-201ENSMUST00000082847 100 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm26265-201ENSMUST00000083277 135 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm23247-201ENSMUST00000083373 107 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Snora34-201ENSMUST00000083402 138 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Gm45558-201ENSMUST00000209384 1895 ntBASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Olfr201-202ENSMUST00000216834 3706 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
Col28a1Q2UY11 Olfr681-203ENSMUST00000215517 4324 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
Col28a1Q2UY11 Gm13219-201ENSMUST00000144870 3019 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
Col28a1Q2UY11 Gm3081-201ENSMUST00000193413 3025 ntBASIC2.1□□□□□ -2.07
Col28a1Q2UY11 AC125374.3-201ENSMUST00000214983 2810 ntBASIC2.1□□□□□ -2.07
Col28a1Q2UY11 Vmn1r185-204ENSMUST00000227411 4928 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
Retrieved 100 of 76,532 protein–RNA pairs in 82.7 ms