| Cntn3 | Q07409 | mt-Ta-201 | ENSMUST00000082398 | 69 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Gm26456-201 | ENSMUST00000082831 | 111 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Olfr1193-202 | ENSMUST00000213893 | 3519 nt | APPRIS P1 TSL 5 BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Gm24443-201 | ENSMUST00000157242 | 132 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Gm25882-201 | ENSMUST00000157784 | 85 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Rnu7-201 | ENSMUST00000158458 | 62 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Gm23409-201 | ENSMUST00000158516 | 237 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Gm25528-201 | ENSMUST00000180264 | 132 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Mir6405-201 | ENSMUST00000184584 | 124 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Mir9-1-201 | ENSMUST00000199907 | 89 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Snord118-201 | ENSMUST00000082965 | 135 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Mir155-201 | ENSMUST00000083463 | 65 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Gm43379-201 | ENSMUST00000196253 | 7726 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Olfr623-202 | ENSMUST00000213840 | 3980 nt | APPRIS P1 TSL 5 BASIC | 2.91 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | CT025538.3-201 | ENSMUST00000225279 | 3848 nt | BASIC | 2.9 | □□□□□ -1.94 | | |
| Cntn3 | Q07409 | Olfr1450-202 | ENSMUST00000213587 | 2872 nt | APPRIS P1 TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | n-R5s15-201 | ENSMUST00000122635 | 111 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm25828-201 | ENSMUST00000157087 | 95 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Snord93-201 | ENSMUST00000175580 | 71 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm27672-201 | ENSMUST00000183751 | 204 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | mt-Tt-201 | ENSMUST00000082422 | 67 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Mir201-201 | ENSMUST00000083470 | 66 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Vmn1r29-203 | ENSMUST00000227761 | 4671 nt | APPRIS P1 BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Vmn1r29-205 | ENSMUST00000228909 | 4658 nt | APPRIS P1 BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr1153-202 | ENSMUST00000217436 | 2144 nt | APPRIS P1 TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Pak3-205 | ENSMUST00000112868 | 8163 nt | APPRIS P3 TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr1206-202 | ENSMUST00000216950 | 3303 nt | APPRIS P1 TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr800-202 | ENSMUST00000217094 | 3831 nt | APPRIS P1 TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | AC161250.2-201 | ENSMUST00000215114 | 3107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Zfp735-201 | ENSMUST00000080407 | 3746 nt | APPRIS P1 TSL 1 (best) BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr896-ps1-202 | ENSMUST00000215219 | 2878 nt | APPRIS P1 TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm23128-201 | ENSMUST00000104257 | 132 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm14567-201 | ENSMUST00000117155 | 174 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm13200-201 | ENSMUST00000138802 | 258 nt | TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Mir7242-201 | ENSMUST00000183710 | 79 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm27379-201 | ENSMUST00000183730 | 123 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm29604-201 | ENSMUST00000187176 | 163 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm38298-201 | ENSMUST00000193578 | 118 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm23128-202 | ENSMUST00000196578 | 133 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm42719-201 | ENSMUST00000197393 | 355 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm45791-201 | ENSMUST00000212908 | 352 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | AC120540.2-201 | ENSMUST00000221716 | 387 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm8508-201 | ENSMUST00000061226 | 363 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm25797-201 | ENSMUST00000082640 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm44680-201 | ENSMUST00000208414 | 2910 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm22946-201 | ENSMUST00000158558 | 82 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm27330-201 | ENSMUST00000184689 | 132 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm9156-201 | ENSMUST00000189660 | 463 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm38407-201 | ENSMUST00000218017 | 474 nt | TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Zbtb37-203 | ENSMUST00000162226 | 18814 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | AC124456.1-201 | ENSMUST00000217391 | 2597 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm38706-201 | ENSMUST00000182397 | 2617 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Zfy2-201 | ENSMUST00000115891 | 2816 nt | APPRIS P1 TSL 1 (best) BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr1437-202 | ENSMUST00000207241 | 3751 nt | APPRIS P1 TSL 2 BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm24068-201 | ENSMUST00000104513 | 132 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Mir293-201 | ENSMUST00000104841 | 80 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm24634-201 | ENSMUST00000158672 | 107 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm19257-201 | ENSMUST00000186121 | 183 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm43898-201 | ENSMUST00000204456 | 424 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm44921-201 | ENSMUST00000205290 | 301 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm23847-201 | ENSMUST00000083829 | 110 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr166-202 | ENSMUST00000213531 | 4205 nt | APPRIS P1 TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr1225-202 | ENSMUST00000216961 | 3231 nt | APPRIS P1 TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm26624-201 | ENSMUST00000181486 | 3769 nt | TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Traj30-201 | ENSMUST00000103711 | 59 nt | APPRIS P1 BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm24632-201 | ENSMUST00000122770 | 323 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm22338-201 | ENSMUST00000157715 | 129 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm25371-201 | ENSMUST00000158162 | 101 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm26157-201 | ENSMUST00000158974 | 126 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm23504-201 | ENSMUST00000158988 | 95 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm22858-201 | ENSMUST00000174972 | 76 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm25996-201 | ENSMUST00000175393 | 117 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm18665-201 | ENSMUST00000189783 | 270 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm37027-201 | ENSMUST00000194642 | 256 nt | TSL 1 (best) BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | AC098718.1-201 | ENSMUST00000226166 | 175 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Muc16-204 | ENSMUST00000208663 | 25437 nt | APPRIS P1 TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm19194-201 | ENSMUST00000192015 | 3774 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm24375-201 | ENSMUST00000104397 | 132 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm13136-201 | ENSMUST00000121031 | 2950 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm24291-201 | ENSMUST00000157633 | 162 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Mir6917-201 | ENSMUST00000184111 | 61 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm44358-201 | ENSMUST00000196301 | 98 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm23095-201 | ENSMUST00000083446 | 107 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Mirlet7f-2-201 | ENSMUST00000083668 | 83 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | n-R5s183-201 | ENSMUST00000083939 | 115 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Nlrp9c-202 | ENSMUST00000085944 | 3216 nt | APPRIS P1 TSL 1 (best) BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Skint5-203 | ENSMUST00000170105 | 4434 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Mir344c-201 | ENSMUST00000103919 | 92 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm3848-201 | ENSMUST00000136693 | 299 nt | TSL 1 (best) BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm25153-201 | ENSMUST00000157118 | 156 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm23090-201 | ENSMUST00000177331 | 78 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm26897-201 | ENSMUST00000180627 | 93 nt | APPRIS P1 TSL 5 BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm35736-201 | ENSMUST00000203681 | 313 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Gm44028-201 | ENSMUST00000205205 | 355 nt | TSL 5 BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | n-R5s176-201 | ENSMUST00000082683 | 109 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Mir429-201 | ENSMUST00000083493 | 83 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| Cntn3 | Q07409 | Olfr229-202 | ENSMUST00000214904 | 3125 nt | APPRIS P1 TSL 5 BASIC | 2.84 | □□□□□ -1.96 | | |
| Cntn3 | Q07409 | Gpr174-201 | ENSMUST00000101294 | 4614 nt | APPRIS P1 TSL 1 (best) BASIC | 2.83 | □□□□□ -1.96 | | |
| Cntn3 | Q07409 | Gm11644-201 | ENSMUST00000119735 | 150 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| Cntn3 | Q07409 | Gm3788-201 | ENSMUST00000119949 | 136 nt | BASIC | 2.83 | □□□□□ -1.96 | | |