Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm15536-201ENSMUST00000121411 114 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm16510-201ENSMUST00000153501 249 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm24908-201ENSMUST00000157294 127 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm22553-201ENSMUST00000157797 295 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm24878-201ENSMUST00000158782 104 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Snord50b-201ENSMUST00000178497 72 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm20058-201ENSMUST00000186939 284 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm37796-201ENSMUST00000195327 134 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 AC164086.1-201ENSMUST00000221038 289 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm25199-201ENSMUST00000083095 104 ntBASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm10203-201ENSMUST00000087348 198 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Olfr1025-ps1-202ENSMUST00000213474 3578 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Olfr1161-203ENSMUST00000217006 3647 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
Col28a1Q2UY11 Gm38071-201ENSMUST00000195792 3378 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm23320-201ENSMUST00000104462 127 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm23535-201ENSMUST00000157542 106 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm22967-201ENSMUST00000157956 239 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm24769-201ENSMUST00000158506 129 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Mir6402-201ENSMUST00000183406 80 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm28992-201ENSMUST00000190534 139 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm37918-201ENSMUST00000192071 120 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm44477-201ENSMUST00000199661 110 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 N4bp2os-201ENSMUST00000201547 235 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
Col28a1Q2UY11 CT030645.1-201ENSMUST00000224020 231 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm23095-201ENSMUST00000083446 107 ntBASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Vmn1r75-206ENSMUST00000228463 6508 ntAPPRIS P2 BASIC2.22□□□□□ -2.05
Col28a1Q2UY11 Gm23011-201ENSMUST00000104148 132 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Snord89-201ENSMUST00000104516 110 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm14602-201ENSMUST00000118625 340 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Vmn1r-ps120-201ENSMUST00000120288 377 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm11334-201ENSMUST00000121969 156 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm23101-201ENSMUST00000157550 137 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm25910-201ENSMUST00000157620 140 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm23588-201ENSMUST00000157659 99 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm22966-201ENSMUST00000157957 129 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm22527-201ENSMUST00000158816 106 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm25457-201ENSMUST00000179509 107 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm42716-203ENSMUST00000197140 259 ntTSL 3 BASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm24625-201ENSMUST00000082622 130 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Gm25136-201ENSMUST00000083253 115 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 Mir488-201ENSMUST00000093595 109 ntBASIC2.21□□□□□ -2.06
Col28a1Q2UY11 AC152951.2-201ENSMUST00000218293 3587 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Usp9y-201ENSMUST00000091188 8094 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm22752-201ENSMUST00000102083 109 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm13976-201ENSMUST00000154367 479 ntTSL 3 BASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm22281-201ENSMUST00000157198 103 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm25625-201ENSMUST00000157221 96 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm26049-201ENSMUST00000157313 108 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Mir1936-201ENSMUST00000158699 93 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm23337-201ENSMUST00000158959 118 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm22775-201ENSMUST00000177630 120 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm23933-201ENSMUST00000178405 79 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm23569-201ENSMUST00000180120 120 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Topbp1-ps1-201ENSMUST00000187120 184 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Igkv1-108-201ENSMUST00000198926 298 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Gm24929-201ENSMUST00000083403 139 ntBASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Ifi214-203ENSMUST00000139092 2888 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
Col28a1Q2UY11 Olfr166-203ENSMUST00000216465 4371 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
Col28a1Q2UY11 AC153967.1-201ENSMUST00000219333 3190 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm6952-201ENSMUST00000118629 159 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm6025-201ENSMUST00000121517 201 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm22483-201ENSMUST00000157986 274 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm23260-201ENSMUST00000158317 172 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm26405-201ENSMUST00000158495 100 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm23197-201ENSMUST00000158809 112 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm17689-201ENSMUST00000170030 330 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm22264-201ENSMUST00000178200 107 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Hmga1b-202ENSMUST00000178955 120 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm25253-201ENSMUST00000179958 107 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm29604-201ENSMUST00000187176 163 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm34411-201ENSMUST00000201180 280 ntTSL 3 BASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm45288-201ENSMUST00000210236 151 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm23723-201ENSMUST00000082996 132 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm10172-201ENSMUST00000085929 558 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Gm44680-201ENSMUST00000208414 2910 ntBASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Ifi203-202ENSMUST00000081216 3610 ntAPPRIS P3 TSL 1 (best) BASIC2.19□□□□□ -2.06
Col28a1Q2UY11 Trdj2-201ENSMUST00000103683 59 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Traj43-201ENSMUST00000103699 57 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Traj6-201ENSMUST00000103734 62 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm15365-201ENSMUST00000122392 300 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Mir1951-201ENSMUST00000157981 89 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm23182-201ENSMUST00000158688 135 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 AC154296.1-201ENSMUST00000198150 67 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 AC159632.1-201ENSMUST00000221808 317 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
Col28a1Q2UY11 CT030687.1-201ENSMUST00000221854 162 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm11351-202ENSMUST00000225724 478 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm25130-201ENSMUST00000082650 156 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm25987-201ENSMUST00000083234 107 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm23947-201ENSMUST00000093636 107 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Olfr1177-ps-202ENSMUST00000216713 2821 ntAPPRIS P5 TSL 3 BASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Il1rapl1-202ENSMUST00000113964 1936 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm37895-201ENSMUST00000192448 4550 ntBASIC2.18□□□□□ -2.06
Col28a1Q2UY11 Gm23951-201ENSMUST00000104029 132 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm13756-201ENSMUST00000117618 222 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm13433-201ENSMUST00000121701 240 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm14491-201ENSMUST00000121919 199 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm23655-201ENSMUST00000122627 105 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm24141-201ENSMUST00000122776 115 ntBASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm12510-201ENSMUST00000152190 362 ntTSL 5 BASIC2.17□□□□□ -2.06
Col28a1Q2UY11 Gm23230-201ENSMUST00000157298 133 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 76,532 protein–RNA pairs in 78.9 ms