| Hoxa3 | P02831 | Mir3103-201 | ENSMUST00000175474 | 67 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Vmn2r-ps20-201 | ENSMUST00000179853 | 382 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm27330-201 | ENSMUST00000184689 | 132 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm33051-201 | ENSMUST00000192940 | 274 nt | TSL 5 BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm34139-201 | ENSMUST00000196166 | 294 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Mir7118-201 | ENSMUST00000197760 | 61 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm36189-201 | ENSMUST00000204113 | 523 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm29521-204 | ENSMUST00000216859 | 279 nt | TSL 5 BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | AC091764.1-201 | ENSMUST00000218029 | 132 nt | TSL 5 BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm9174-201 | ENSMUST00000078149 | 255 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Olfr251-202 | ENSMUST00000214865 | 4930 nt | APPRIS ALT2 TSL 5 BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm45518-201 | ENSMUST00000210776 | 2583 nt | TSL 1 (best) BASIC | 2.3 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | AC153964.2-201 | ENSMUST00000217704 | 2474 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Olfr869-201 | ENSMUST00000213024 | 1783 nt | APPRIS P1 TSL 2 BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm23128-201 | ENSMUST00000104257 | 132 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Rpl30-ps9-201 | ENSMUST00000122265 | 345 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm24598-201 | ENSMUST00000122510 | 74 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Mir1951-201 | ENSMUST00000157981 | 89 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm22483-201 | ENSMUST00000157986 | 274 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm24277-201 | ENSMUST00000158661 | 104 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm22858-201 | ENSMUST00000174972 | 76 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm24304-201 | ENSMUST00000177635 | 107 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm23128-202 | ENSMUST00000196578 | 133 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm33866-201 | ENSMUST00000196911 | 289 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm44256-201 | ENSMUST00000203304 | 335 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm44182-201 | ENSMUST00000204052 | 115 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm45116-201 | ENSMUST00000207392 | 275 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm44966-201 | ENSMUST00000208096 | 157 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm18188-201 | ENSMUST00000219386 | 478 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | n-R5s176-201 | ENSMUST00000082683 | 109 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm25199-201 | ENSMUST00000083095 | 104 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm23678-201 | ENSMUST00000083157 | 107 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Olfr576-201 | ENSMUST00000098213 | 3132 nt | APPRIS P1 TSL 5 BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm42862-201 | ENSMUST00000197494 | 2621 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Olfr1229-203 | ENSMUST00000214593 | 3404 nt | APPRIS P1 TSL 5 BASIC | 2.29 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Olfr1046-202 | ENSMUST00000213987 | 2770 nt | APPRIS P1 TSL 5 BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm2869-201 | ENSMUST00000124359 | 2621 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm45393-201 | ENSMUST00000211634 | 2631 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Olfr218-203 | ENSMUST00000216603 | 3623 nt | APPRIS P1 TSL 5 BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Vmn1r185-208 | ENSMUST00000228004 | 5682 nt | APPRIS P1 BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | n-R5s158-201 | ENSMUST00000104095 | 118 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm14491-201 | ENSMUST00000121919 | 199 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm22221-201 | ENSMUST00000157362 | 103 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm25494-201 | ENSMUST00000158143 | 100 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm23409-201 | ENSMUST00000158516 | 237 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm27285-201 | ENSMUST00000183875 | 127 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm37997-201 | ENSMUST00000193515 | 267 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm40331-201 | ENSMUST00000198430 | 217 nt | TSL 3 BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Mir9-1-201 | ENSMUST00000199907 | 89 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Mir302d-201 | ENSMUST00000083513 | 66 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm23847-201 | ENSMUST00000083829 | 110 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm10234-201 | ENSMUST00000089304 | 60 nt | APPRIS P1 TSL 5 BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Olfr1177-ps-202 | ENSMUST00000216713 | 2821 nt | APPRIS P5 TSL 3 BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | Gm38706-201 | ENSMUST00000182397 | 2617 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa3 | P02831 | AC154515.1-201 | ENSMUST00000226085 | 2841 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Olfr509-202 | ENSMUST00000213756 | 3547 nt | APPRIS P1 TSL 5 BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm25538-201 | ENSMUST00000101943 | 107 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm23015-201 | ENSMUST00000104145 | 128 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm26247-201 | ENSMUST00000116702 | 91 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Mir466k-201 | ENSMUST00000116774 | 122 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm23470-201 | ENSMUST00000157129 | 120 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm23895-201 | ENSMUST00000158108 | 160 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm22075-201 | ENSMUST00000158599 | 192 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm23268-201 | ENSMUST00000175494 | 78 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Vmn2r-ps17-201 | ENSMUST00000178733 | 375 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Mir7242-201 | ENSMUST00000183710 | 79 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm45489-201 | ENSMUST00000211753 | 443 nt | TSL 3 BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm19790-201 | ENSMUST00000214414 | 251 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm46993-201 | ENSMUST00000220708 | 259 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Olfr479-202 | ENSMUST00000209805 | 2902 nt | APPRIS P1 TSL 5 BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm42770-201 | ENSMUST00000199657 | 4155 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Acer3-202 | ENSMUST00000120520 | 3964 nt | TSL 1 (best) BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Olfr1218-203 | ENSMUST00000215048 | 3900 nt | APPRIS P1 TSL 5 BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Pak3-203 | ENSMUST00000112864 | 8612 nt | APPRIS P3 TSL 1 (best) BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm22674-201 | ENSMUST00000104413 | 131 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Snord53-201 | ENSMUST00000175146 | 78 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm24390-201 | ENSMUST00000179578 | 62 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm28344-201 | ENSMUST00000185704 | 279 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | AC155839.1-201 | ENSMUST00000200105 | 147 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm5002-201 | ENSMUST00000207145 | 223 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Olfr420-202 | ENSMUST00000213748 | 3806 nt | APPRIS P1 TSL 5 BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | AC174457.1-201 | ENSMUST00000215932 | 226 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | CAAA01090905.1-201 | ENSMUST00000219056 | 426 nt | TSL 2 BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | CT025538.3-201 | ENSMUST00000225279 | 3848 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm37928-201 | ENSMUST00000193265 | 4131 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Olfr1206-202 | ENSMUST00000216950 | 3303 nt | APPRIS P1 TSL 5 BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm26341-201 | ENSMUST00000104561 | 134 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm13801-201 | ENSMUST00000120750 | 160 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | n-R5s191-201 | ENSMUST00000122724 | 116 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm24015-201 | ENSMUST00000157725 | 232 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm24681-201 | ENSMUST00000158760 | 107 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm23190-201 | ENSMUST00000180307 | 64 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm27991-201 | ENSMUST00000184804 | 137 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm19257-201 | ENSMUST00000186121 | 183 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm6801-201 | ENSMUST00000190697 | 339 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm24615-201 | ENSMUST00000083268 | 113 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Zfp953-201 | ENSMUST00000081582 | 4677 nt | APPRIS P1 TSL 1 (best) BASIC | 2.24 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Mir344c-201 | ENSMUST00000103919 | 92 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Gm14748-201 | ENSMUST00000119819 | 411 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| Hoxa3 | P02831 | Cox20-ps-201 | ENSMUST00000119872 | 353 nt | BASIC | 2.24 | □□□□□ -2.05 | | |