| Raf1 | Q99N57 | Snord11-201 | ENSMUST00000158468 | 84 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm24053-201 | ENSMUST00000158620 | 105 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm25488-201 | ENSMUST00000158728 | 118 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm23005-201 | ENSMUST00000158950 | 136 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm24818-201 | ENSMUST00000175093 | 161 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm25933-201 | ENSMUST00000178943 | 108 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm29865-201 | ENSMUST00000197726 | 451 nt | TSL 1 (best) BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Mir466e-201 | ENSMUST00000198862 | 84 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Igkv13-55-1-201 | ENSMUST00000200400 | 308 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Mir466c-1-201 | ENSMUST00000200654 | 84 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm31447-201 | ENSMUST00000222345 | 384 nt | TSL 3 BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Knl1-202 | ENSMUST00000028802 | 7800 nt | APPRIS P1 TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm9795-201 | ENSMUST00000062156 | 693 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm25589-201 | ENSMUST00000082502 | 166 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm24044-201 | ENSMUST00000083107 | 156 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm26126-201 | ENSMUST00000083188 | 164 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm37895-201 | ENSMUST00000192448 | 4550 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | F8-202 | ENSMUST00000114085 | 7295 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm13219-201 | ENSMUST00000144870 | 3019 nt | TSL 1 (best) BASIC | 2.04 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Cd209e-201 | ENSMUST00000033888 | 1802 nt | APPRIS P1 TSL 1 (best) BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm13756-201 | ENSMUST00000117618 | 222 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm25996-201 | ENSMUST00000175393 | 117 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Mir28b-201 | ENSMUST00000175399 | 80 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm24573-201 | ENSMUST00000175499 | 112 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm23047-201 | ENSMUST00000177661 | 94 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm17067-202 | ENSMUST00000180131 | 123 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm26897-201 | ENSMUST00000180627 | 93 nt | APPRIS P1 TSL 5 BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm27540-201 | ENSMUST00000184950 | 187 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Mir3569-201 | ENSMUST00000185080 | 58 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm19901-201 | ENSMUST00000192191 | 495 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | AC141895.1-201 | ENSMUST00000218141 | 273 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | AC159709.1-201 | ENSMUST00000220445 | 349 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | AC165157.3-201 | ENSMUST00000220815 | 103 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Gm6109-201 | ENSMUST00000223297 | 348 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | mt-Ti-201 | ENSMUST00000082393 | 69 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Zfp160-201 | ENSMUST00000088811 | 3791 nt | APPRIS P1 TSL 1 (best) BASIC | 2.03 | □□□□□ -2.08 | | |
| Raf1 | Q99N57 | Olfr777-202 | ENSMUST00000204573 | 5407 nt | APPRIS P1 TSL 5 BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Olfr974-202 | ENSMUST00000213246 | 3561 nt | APPRIS P1 TSL 2 BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm15215-201 | ENSMUST00000117773 | 489 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm11786-201 | ENSMUST00000120799 | 155 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm22027-201 | ENSMUST00000122737 | 127 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm23640-201 | ENSMUST00000157860 | 104 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm24900-201 | ENSMUST00000158128 | 134 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Mir7226-201 | ENSMUST00000184953 | 60 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm28076-201 | ENSMUST00000188337 | 410 nt | TSL 3 BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm28921-201 | ENSMUST00000190219 | 378 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm37557-201 | ENSMUST00000191640 | 139 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm43676-201 | ENSMUST00000197532 | 540 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm44977-201 | ENSMUST00000205283 | 420 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | CT033785.1-201 | ENSMUST00000224872 | 272 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | AC124104.1-201 | ENSMUST00000226279 | 417 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm18795-201 | ENSMUST00000222371 | 3266 nt | TSL 5 BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Snhg14-213 | ENSMUST00000190666 | 3708 nt | TSL 1 (best) BASIC | 2.02 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Olfr868-201 | ENSMUST00000212767 | 4196 nt | APPRIS P1 TSL 3 BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Trdj2-201 | ENSMUST00000103683 | 59 nt | APPRIS P1 BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm23013-201 | ENSMUST00000104146 | 106 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Mir344e-201 | ENSMUST00000104677 | 66 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm24480-201 | ENSMUST00000157442 | 103 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm16326-201 | ENSMUST00000162843 | 414 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Obox4-ps37-201 | ENSMUST00000177223 | 276 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm27402-201 | ENSMUST00000183890 | 120 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Scgb1b13-ps-201 | ENSMUST00000187330 | 273 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Sprr2h-202 | ENSMUST00000191886 | 297 nt | TSL 1 (best) BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Mir465d-201 | ENSMUST00000196314 | 58 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm20144-201 | ENSMUST00000203031 | 165 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm43993-201 | ENSMUST00000203972 | 247 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm20083-201 | ENSMUST00000205849 | 751 nt | TSL 3 BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm45365-201 | ENSMUST00000209489 | 256 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm25130-201 | ENSMUST00000082650 | 156 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm24355-201 | ENSMUST00000082858 | 122 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm22358-201 | ENSMUST00000082877 | 122 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm25188-201 | ENSMUST00000083913 | 122 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Olfr681-203 | ENSMUST00000215517 | 4324 nt | APPRIS P1 TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm12926-201 | ENSMUST00000121158 | 409 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm11192-201 | ENSMUST00000127017 | 151 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm23535-201 | ENSMUST00000157542 | 106 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm25910-201 | ENSMUST00000157620 | 140 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm24769-201 | ENSMUST00000158506 | 129 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm25711-201 | ENSMUST00000158633 | 128 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm22118-201 | ENSMUST00000175593 | 171 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm42807-201 | ENSMUST00000200141 | 329 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm2511-201 | ENSMUST00000205521 | 457 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Mir30d-201 | ENSMUST00000083503 | 82 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Rny1-201 | ENSMUST00000083767 | 112 nt | BASIC | 2 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm45461-201 | ENSMUST00000211726 | 4535 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm37096-201 | ENSMUST00000192317 | 2058 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Ifi203-209 | ENSMUST00000156895 | 3605 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm22752-201 | ENSMUST00000102083 | 109 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Nell1os-202 | ENSMUST00000136672 | 491 nt | TSL 5 BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm12510-201 | ENSMUST00000152190 | 362 nt | TSL 5 BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm23982-201 | ENSMUST00000157141 | 106 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm23542-201 | ENSMUST00000158208 | 96 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Snora15-201 | ENSMUST00000177461 | 131 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm26426-201 | ENSMUST00000177866 | 123 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm26060-201 | ENSMUST00000180094 | 123 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Mir6406-201 | ENSMUST00000183592 | 120 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm37586-201 | ENSMUST00000193654 | 204 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Gm44666-201 | ENSMUST00000208544 | 391 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | 4930598N05Rik-207 | ENSMUST00000208997 | 83 nt | TSL 5 BASIC | 1.99 | □□□□□ -2.09 | | |
| Raf1 | Q99N57 | Mir322-201 | ENSMUST00000083484 | 95 nt | BASIC | 1.99 | □□□□□ -2.09 | | |