Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Gm6190-201ENSMUST00000220683 1374 ntBASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ube3bQ9ES34 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Gm29518-201ENSMUST00000190858 372 ntBASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Gm33142-201ENSMUST00000193913 867 ntBASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ube3bQ9ES34 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Gm11336-201ENSMUST00000118168 334 ntBASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Gm18115-201ENSMUST00000221209 621 ntBASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC20.21■□□□□ 0.83
Ube3bQ9ES34 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ube3bQ9ES34 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 AC154471.1-201ENSMUST00000224418 436 ntBASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ube3bQ9ES34 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Gm17808-201ENSMUST00000200859 894 ntBASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ube3bQ9ES34 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms