Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim54Q9ERP3 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim54Q9ERP3 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.39■□□□□ 0.54
Trim54Q9ERP3 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Trim54Q9ERP3 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim54Q9ERP3 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Gm17971-201ENSMUST00000190239 806 ntBASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim54Q9ERP3 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim54Q9ERP3 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim54Q9ERP3 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.36■□□□□ 0.53
Trim54Q9ERP3 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim54Q9ERP3 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Gm18669-201ENSMUST00000216049 778 ntBASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim54Q9ERP3 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms