Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Gm9103-201ENSMUST00000119371 405 ntBASIC18.73■□□□□ 0.59
Rpap3Q9D706 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Gm18115-201ENSMUST00000221209 621 ntBASIC18.73■□□□□ 0.59
Rpap3Q9D706 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpap3Q9D706 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.72■□□□□ 0.59
Rpap3Q9D706 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Gm45328-201ENSMUST00000210942 917 ntBASIC18.72■□□□□ 0.59
Rpap3Q9D706 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.72■□□□□ 0.59
Rpap3Q9D706 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.72■□□□□ 0.59
Rpap3Q9D706 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpap3Q9D706 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpap3Q9D706 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.7■□□□□ 0.58
Rpap3Q9D706 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpap3Q9D706 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.69■□□□□ 0.58
Rpap3Q9D706 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpap3Q9D706 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms