Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19■□□□□ 0.63
Smc1aQ9CU62 Gm11539-201ENSMUST00000119837 557 ntBASIC19■□□□□ 0.63
Smc1aQ9CU62 Gm13436-201ENSMUST00000120418 567 ntBASIC19■□□□□ 0.63
Smc1aQ9CU62 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19■□□□□ 0.63
Smc1aQ9CU62 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Gm3375-201ENSMUST00000203929 796 ntBASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Smc1aQ9CU62 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Smc1aQ9CU62 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Gm7889-201ENSMUST00000185591 958 ntBASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Smc1aQ9CU62 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms