Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cstf1Q99LC2 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cstf1Q99LC2 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Cstf1Q99LC2 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cstf1Q99LC2 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cstf1Q99LC2 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cstf1Q99LC2 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Cstf1Q99LC2 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Cstf1Q99LC2 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC16.96■□□□□ 0.3
Cstf1Q99LC2 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Cstf1Q99LC2 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Cstf1Q99LC2 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.95■□□□□ 0.3
Cstf1Q99LC2 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Gm5712-201ENSMUST00000199748 1043 ntBASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.95■□□□□ 0.3
Cstf1Q99LC2 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Gm43073-201ENSMUST00000198200 1189 ntBASIC16.94■□□□□ 0.3
Cstf1Q99LC2 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.94■□□□□ 0.3
Cstf1Q99LC2 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cstf1Q99LC2 Gm42922-201ENSMUST00000195887 2078 ntBASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.93■□□□□ 0.3
Cstf1Q99LC2 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Tgds-204ENSMUST00000228543 1594 ntBASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cstf1Q99LC2 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Cstf1Q99LC2 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cstf1Q99LC2 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Cstf1Q99LC2 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Cstf1Q99LC2 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms