Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ushbp1Q8R370 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ushbp1Q8R370 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Gm10013-201ENSMUST00000106074 672 ntBASIC19.04■□□□□ 0.64
Ushbp1Q8R370 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ushbp1Q8R370 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ushbp1Q8R370 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ushbp1Q8R370 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ushbp1Q8R370 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 AA414768-201ENSMUST00000121924 1257 ntBASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ushbp1Q8R370 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms