Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Gm11539-201ENSMUST00000119837 557 ntBASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Gm13436-201ENSMUST00000120418 567 ntBASIC20.08■□□□□ 0.81
Nup88Q8CEC0 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Nup88Q8CEC0 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nup88Q8CEC0 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC20.08■□□□□ 0.8
Nup88Q8CEC0 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Nup88Q8CEC0 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nup88Q8CEC0 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC20.08■□□□□ 0.8
Nup88Q8CEC0 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nup88Q8CEC0 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Nup88Q8CEC0 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nup88Q8CEC0 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Mir2861-201ENSMUST00000175539 82 ntBASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nup88Q8CEC0 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.05■□□□□ 0.8
Nup88Q8CEC0 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nup88Q8CEC0 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nup88Q8CEC0 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nup88Q8CEC0 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Nup88Q8CEC0 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nup88Q8CEC0 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nup88Q8CEC0 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nup88Q8CEC0 Haglr-201ENSMUST00000100000 2085 ntBASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms