Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Fcho2-208ENSMUST00000224992 2964 ntBASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Gm43808-201ENSMUST00000202534 2065 ntBASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp40Q8BWR4 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Gm18421-201ENSMUST00000204122 625 ntBASIC23.3■■□□□ 1.32
Usp40Q8BWR4 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Gm7461-201ENSMUST00000058918 827 ntBASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Spr-ps1-201ENSMUST00000089584 605 ntBASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp40Q8BWR4 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Gm34391-201ENSMUST00000203706 907 ntBASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Usp40Q8BWR4 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Gm16499-203ENSMUST00000204633 2177 ntBASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Gm24589-201ENSMUST00000116692 94 ntBASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Gm29707-201ENSMUST00000196325 491 ntBASIC23.28■■□□□ 1.32
Usp40Q8BWR4 AC125350.1-201ENSMUST00000225115 903 ntBASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp40Q8BWR4 AL590614.2-201ENSMUST00000225374 1937 ntBASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Usp40Q8BWR4 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
Usp40Q8BWR4 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 AC124569.2-201ENSMUST00000225998 818 ntBASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Usp40Q8BWR4 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Usp40Q8BWR4 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Usp40Q8BWR4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC23.24■■□□□ 1.31
Usp40Q8BWR4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms