Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC20.05■□□□□ 0.8
Trim56Q80VI1 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim56Q80VI1 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.04■□□□□ 0.8
Trim56Q80VI1 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.04■□□□□ 0.8
Trim56Q80VI1 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm26039-201ENSMUST00000158152 144 ntBASIC20.04■□□□□ 0.8
Trim56Q80VI1 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim56Q80VI1 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Trim56Q80VI1 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.03■□□□□ 0.8
Trim56Q80VI1 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.03■□□□□ 0.8
Trim56Q80VI1 Phf7-203ENSMUST00000226565 1971 ntBASIC20.03■□□□□ 0.8
Trim56Q80VI1 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim56Q80VI1 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Gm23634-201ENSMUST00000175071 91 ntBASIC20.02■□□□□ 0.8
Trim56Q80VI1 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.02■□□□□ 0.8
Trim56Q80VI1 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim56Q80VI1 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim56Q80VI1 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim56Q80VI1 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim56Q80VI1 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Gm13186-201ENSMUST00000118031 316 ntBASIC20.01■□□□□ 0.79
Trim56Q80VI1 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim56Q80VI1 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trim56Q80VI1 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Gm27389-201ENSMUST00000183622 195 ntBASIC20■□□□□ 0.79
Trim56Q80VI1 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC20■□□□□ 0.79
Trim56Q80VI1 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms