Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Gm14859-201ENSMUST00000117752 357 ntBASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Gm7370-201ENSMUST00000219471 767 ntBASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb4Q6P8W9 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Gm13474-201ENSMUST00000122466 815 ntBASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Hmgb4Q6P8W9 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb4Q6P8W9 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.78■□□□□ 0.44
Hmgb4Q6P8W9 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Gm27389-201ENSMUST00000183622 195 ntBASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Gm9731-201ENSMUST00000209480 747 ntBASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb4Q6P8W9 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgb4Q6P8W9 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.77■□□□□ 0.43
Hmgb4Q6P8W9 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgb4Q6P8W9 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgb4Q6P8W9 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.76■□□□□ 0.43
Hmgb4Q6P8W9 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgb4Q6P8W9 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgb4Q6P8W9 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgb4Q6P8W9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgb4Q6P8W9 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms