Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col7a1Q63870 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Gm5312-201ENSMUST00000203728 547 ntBASIC14.11□□□□□ -0.15
Col7a1Q63870 Gm7506-201ENSMUST00000207758 815 ntBASIC14.11□□□□□ -0.15
Col7a1Q63870 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Gm2423-201ENSMUST00000074863 733 ntBASIC14.11□□□□□ -0.15
Col7a1Q63870 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Gm29791-202ENSMUST00000207888 369 ntBASIC14.11□□□□□ -0.15
Col7a1Q63870 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col7a1Q63870 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col7a1Q63870 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC14.1□□□□□ -0.15
Col7a1Q63870 Gm19721-201ENSMUST00000195284 1764 ntBASIC14.1□□□□□ -0.15
Col7a1Q63870 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.1□□□□□ -0.15
Col7a1Q63870 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Col7a1Q63870 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col7a1Q63870 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col7a1Q63870 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC14.1□□□□□ -0.15
Col7a1Q63870 AC174742.1-201ENSMUST00000218272 304 ntBASIC14.1□□□□□ -0.15
Col7a1Q63870 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col7a1Q63870 Gm9194-201ENSMUST00000220749 1447 ntBASIC14.1□□□□□ -0.15
Col7a1Q63870 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Col7a1Q63870 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Col7a1Q63870 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Col7a1Q63870 AC130829.1-201ENSMUST00000221548 494 ntBASIC14.09□□□□□ -0.15
Col7a1Q63870 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.09□□□□□ -0.15
Col7a1Q63870 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Col7a1Q63870 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.09□□□□□ -0.15
Col7a1Q63870 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col7a1Q63870 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.09□□□□□ -0.15
Col7a1Q63870 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col7a1Q63870 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col7a1Q63870 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC14.08□□□□□ -0.15
Col7a1Q63870 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC14.08□□□□□ -0.15
Col7a1Q63870 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC14.08□□□□□ -0.15
Col7a1Q63870 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col7a1Q63870 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Col7a1Q63870 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Gm44335-201ENSMUST00000196879 141 ntBASIC14.08□□□□□ -0.16
Col7a1Q63870 Gm44297-201ENSMUST00000198304 141 ntBASIC14.08□□□□□ -0.16
Col7a1Q63870 Gm44346-201ENSMUST00000198851 141 ntBASIC14.08□□□□□ -0.16
Col7a1Q63870 Gm18421-201ENSMUST00000204122 625 ntBASIC14.08□□□□□ -0.16
Col7a1Q63870 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Col7a1Q63870 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Col7a1Q63870 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Col7a1Q63870 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
Col7a1Q63870 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col7a1Q63870 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col7a1Q63870 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col7a1Q63870 Gm9885-202ENSMUST00000186234 2209 ntBASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 7.5 ms