Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
Usp28Q5I043 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Usp28Q5I043 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Usp28Q5I043 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.32■□□□□ 0.68
Usp28Q5I043 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.32■□□□□ 0.68
Usp28Q5I043 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.32■□□□□ 0.68
Usp28Q5I043 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Usp28Q5I043 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
Usp28Q5I043 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Usp28Q5I043 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Usp28Q5I043 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usp28Q5I043 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.3■□□□□ 0.68
Usp28Q5I043 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.3■□□□□ 0.68
Usp28Q5I043 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.3■□□□□ 0.68
Usp28Q5I043 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Usp28Q5I043 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Usp28Q5I043 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Usp28Q5I043 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Usp28Q5I043 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Usp28Q5I043 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC19.29■□□□□ 0.68
Usp28Q5I043 Gm37025-201ENSMUST00000195159 829 ntBASIC19.29■□□□□ 0.68
Usp28Q5I043 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp28Q5I043 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Usp28Q5I043 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.28■□□□□ 0.68
Usp28Q5I043 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp28Q5I043 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Gm15378-201ENSMUST00000121894 207 ntBASIC19.27■□□□□ 0.68
Usp28Q5I043 Gm10653-202ENSMUST00000139570 835 ntBASIC19.27■□□□□ 0.68
Usp28Q5I043 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.27■□□□□ 0.68
Usp28Q5I043 Gm27000-201ENSMUST00000182943 842 ntBASIC19.27■□□□□ 0.68
Usp28Q5I043 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.27■□□□□ 0.68
Usp28Q5I043 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.27■□□□□ 0.68
Usp28Q5I043 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms