Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3aQ3ULJ3 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Grk6-206ENSMUST00000224995 2971 ntBASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3aQ3ULJ3 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3aQ3ULJ3 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Gm44450-201ENSMUST00000199528 114 ntBASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3aQ3ULJ3 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3aQ3ULJ3 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3aQ3ULJ3 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3aQ3ULJ3 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.83■□□□□ 0.45
Upf3aQ3ULJ3 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3aQ3ULJ3 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Gm43347-201ENSMUST00000200226 580 ntBASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Gm5864-201ENSMUST00000202263 970 ntBASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3aQ3ULJ3 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Gm15372-201ENSMUST00000120729 834 ntBASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Mir8098-201ENSMUST00000184011 137 ntBASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3aQ3ULJ3 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms