Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm9847-201ENSMUST00000052528 599 ntBASIC17.69■□□□□ 0.42
Rnf40Q3U319 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.69■□□□□ 0.42
Rnf40Q3U319 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf40Q3U319 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.67■□□□□ 0.42
Rnf40Q3U319 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.67■□□□□ 0.42
Rnf40Q3U319 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf40Q3U319 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.66■□□□□ 0.42
Rnf40Q3U319 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.66■□□□□ 0.42
Rnf40Q3U319 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf40Q3U319 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rnf40Q3U319 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Rnf40Q3U319 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.64■□□□□ 0.41
Rnf40Q3U319 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.64■□□□□ 0.41
Rnf40Q3U319 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rnf40Q3U319 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Rnf40Q3U319 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Rnf40Q3U319 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rnf40Q3U319 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rnf40Q3U319 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Rnf40Q3U319 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rnf40Q3U319 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms