Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb1P63158 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb1P63158 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Hmgb1P63158 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.68■□□□□ 0.58
Hmgb1P63158 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Hmgb1P63158 Gm13216-201ENSMUST00000117145 591 ntBASIC18.68■□□□□ 0.58
Hmgb1P63158 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Hmgb1P63158 Gm5421-201ENSMUST00000181698 2354 ntBASIC18.68■□□□□ 0.58
Hmgb1P63158 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb1P63158 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Hmgb1P63158 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Hmgb1P63158 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.67■□□□□ 0.58
Hmgb1P63158 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Hmgb1P63158 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb1P63158 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb1P63158 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.66■□□□□ 0.58
Hmgb1P63158 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.65■□□□□ 0.58
Hmgb1P63158 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb1P63158 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb1P63158 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb1P63158 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb1P63158 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Hmgb1P63158 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb1P63158 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
Hmgb1P63158 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Hmgb1P63158 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.64■□□□□ 0.57
Hmgb1P63158 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
Hmgb1P63158 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb1P63158 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Hmgb1P63158 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms