Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Gm14859-201ENSMUST00000117752 357 ntBASIC19.66■□□□□ 0.74
Traf1P39428 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.66■□□□□ 0.74
Traf1P39428 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC19.66■□□□□ 0.74
Traf1P39428 Gm26039-201ENSMUST00000158152 144 ntBASIC19.66■□□□□ 0.74
Traf1P39428 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Traf1P39428 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.66■□□□□ 0.74
Traf1P39428 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.66■□□□□ 0.74
Traf1P39428 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Traf1P39428 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.65■□□□□ 0.74
Traf1P39428 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Traf1P39428 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.65■□□□□ 0.74
Traf1P39428 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Traf1P39428 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Traf1P39428 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Traf1P39428 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Traf1P39428 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.73
Traf1P39428 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Traf1P39428 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
Traf1P39428 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Traf1P39428 Actl10-202ENSMUST00000226583 1501 ntBASIC19.63■□□□□ 0.73
Traf1P39428 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC19.63■□□□□ 0.73
Traf1P39428 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Traf1P39428 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Traf1P39428 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Traf1P39428 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Traf1P39428 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.62■□□□□ 0.73
Traf1P39428 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Traf1P39428 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.62■□□□□ 0.73
Traf1P39428 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.62■□□□□ 0.73
Traf1P39428 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Traf1P39428 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Traf1P39428 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
Traf1P39428 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Traf1P39428 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.62■□□□□ 0.73
Traf1P39428 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.62■□□□□ 0.73
Traf1P39428 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.62■□□□□ 0.73
Traf1P39428 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Traf1P39428 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Traf1P39428 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Traf1P39428 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Traf1P39428 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Traf1P39428 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
Traf1P39428 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Traf1P39428 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Traf1P39428 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms