Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Sdc1P18828 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
Sdc1P18828 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sdc1P18828 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sdc1P18828 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sdc1P18828 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Sdc1P18828 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sdc1P18828 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sdc1P18828 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Sdc1P18828 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sdc1P18828 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC14.01□□□□□ -0.17
Sdc1P18828 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC14.01□□□□□ -0.17
Sdc1P18828 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Sdc1P18828 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC14.01□□□□□ -0.17
Sdc1P18828 Smad6-203ENSMUST00000179458 273 ntBASIC14.01□□□□□ -0.17
Sdc1P18828 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
Sdc1P18828 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC14.01□□□□□ -0.17
Sdc1P18828 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC14.01□□□□□ -0.17
Sdc1P18828 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sdc1P18828 AC093043.3-201ENSMUST00000226531 2273 ntBASIC14.01□□□□□ -0.17
Sdc1P18828 Gm43272-201ENSMUST00000200599 1584 ntBASIC14□□□□□ -0.17
Sdc1P18828 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 AC153526.5-201ENSMUST00000218661 2147 ntBASIC14□□□□□ -0.17
Sdc1P18828 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Sdc1P18828 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sdc1P18828 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sdc1P18828 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC14□□□□□ -0.17
Sdc1P18828 Flvcr1-202ENSMUST00000191946 1216 ntBASIC14□□□□□ -0.17
Sdc1P18828 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC14□□□□□ -0.17
Sdc1P18828 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC14□□□□□ -0.17
Sdc1P18828 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC14□□□□□ -0.17
Sdc1P18828 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Sdc1P18828 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Sdc1P18828 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sdc1P18828 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sdc1P18828 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC13.99□□□□□ -0.17
Sdc1P18828 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
Sdc1P18828 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Sdc1P18828 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC13.99□□□□□ -0.17
Sdc1P18828 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC13.99□□□□□ -0.17
Sdc1P18828 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
Sdc1P18828 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms