Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.4■□□□□ 0.54
RaraP11416 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.4■□□□□ 0.54
RaraP11416 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RaraP11416 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.4■□□□□ 0.54
RaraP11416 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
RaraP11416 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RaraP11416 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RaraP11416 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.39■□□□□ 0.53
RaraP11416 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RaraP11416 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.39■□□□□ 0.53
RaraP11416 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RaraP11416 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
RaraP11416 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.39■□□□□ 0.53
RaraP11416 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RaraP11416 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Gm5643-201ENSMUST00000117081 966 ntBASIC18.38■□□□□ 0.53
RaraP11416 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
RaraP11416 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RaraP11416 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC18.37■□□□□ 0.53
RaraP11416 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
RaraP11416 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.37■□□□□ 0.53
RaraP11416 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.37■□□□□ 0.53
RaraP11416 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.37■□□□□ 0.53
RaraP11416 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
RaraP11416 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.37■□□□□ 0.53
RaraP11416 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RaraP11416 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RaraP11416 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RaraP11416 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RaraP11416 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RaraP11416 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RaraP11416 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
RaraP11416 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RaraP11416 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
RaraP11416 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RaraP11416 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.35■□□□□ 0.53
RaraP11416 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RaraP11416 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.35■□□□□ 0.53
RaraP11416 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms