Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Chmp6P0C0A3 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Chmp6P0C0A3 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Chmp6P0C0A3 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Chmp6P0C0A3 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Chmp6P0C0A3 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Gm24841-201ENSMUST00000158676 357 ntBASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Odf3b-204ENSMUST00000227834 930 ntBASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.51■□□□□ 0.55
Chmp6P0C0A3 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Mir8112-201ENSMUST00000184382 131 ntBASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Gm21814-202ENSMUST00000203277 873 ntBASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Gm3375-201ENSMUST00000203929 796 ntBASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chmp6P0C0A3 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Gm15565-201ENSMUST00000118890 427 ntBASIC18.49■□□□□ 0.55
Chmp6P0C0A3 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Gm38027-201ENSMUST00000192315 235 ntBASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Gm30025-201ENSMUST00000218555 728 ntBASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.49■□□□□ 0.55
Chmp6P0C0A3 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms