Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col3a1P08121 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Col3a1P08121 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC20.29■□□□□ 0.84
Col3a1P08121 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC20.29■□□□□ 0.84
Col3a1P08121 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC20.29■□□□□ 0.84
Col3a1P08121 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Col3a1P08121 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Col3a1P08121 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.28■□□□□ 0.84
Col3a1P08121 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC20.28■□□□□ 0.84
Col3a1P08121 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC20.28■□□□□ 0.84
Col3a1P08121 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC20.28■□□□□ 0.84
Col3a1P08121 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC20.28■□□□□ 0.84
Col3a1P08121 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col3a1P08121 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Gm24589-201ENSMUST00000116692 94 ntBASIC20.27■□□□□ 0.84
Col3a1P08121 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC20.27■□□□□ 0.84
Col3a1P08121 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col3a1P08121 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Col3a1P08121 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col3a1P08121 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Col3a1P08121 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
Col3a1P08121 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Col3a1P08121 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC20.26■□□□□ 0.83
Col3a1P08121 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col3a1P08121 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Col3a1P08121 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col3a1P08121 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC20.26■□□□□ 0.83
Col3a1P08121 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC20.26■□□□□ 0.83
Col3a1P08121 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col3a1P08121 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC20.26■□□□□ 0.83
Col3a1P08121 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col3a1P08121 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col3a1P08121 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col3a1P08121 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col3a1P08121 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col3a1P08121 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Col3a1P08121 Gm15372-201ENSMUST00000120729 834 ntBASIC20.25■□□□□ 0.83
Col3a1P08121 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col3a1P08121 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col3a1P08121 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col3a1P08121 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col3a1P08121 Gfra2-202ENSMUST00000227633 1480 ntBASIC20.25■□□□□ 0.83
Col3a1P08121 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
Col3a1P08121 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Col3a1P08121 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
Col3a1P08121 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Birc2-201ENSMUST00000054878 378 ntBASIC20.24■□□□□ 0.83
Col3a1P08121 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC20.24■□□□□ 0.83
Col3a1P08121 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
Col3a1P08121 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.24■□□□□ 0.83
Col3a1P08121 Gm12895-201ENSMUST00000122214 226 ntBASIC20.24■□□□□ 0.83
Col3a1P08121 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC20.24■□□□□ 0.83
Col3a1P08121 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col3a1P08121 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col3a1P08121 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col3a1P08121 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col3a1P08121 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC20.23■□□□□ 0.83
Col3a1P08121 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col3a1P08121 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col3a1P08121 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms