Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Smarce1O54941 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Gm18666-201ENSMUST00000190039 958 ntBASIC20.23■□□□□ 0.83
Smarce1O54941 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Smarce1O54941 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarce1O54941 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC20.22■□□□□ 0.83
Smarce1O54941 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Smarce1O54941 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC20.22■□□□□ 0.83
Smarce1O54941 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.22■□□□□ 0.83
Smarce1O54941 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC20.22■□□□□ 0.83
Smarce1O54941 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.22■□□□□ 0.83
Smarce1O54941 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Smarce1O54941 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarce1O54941 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20.21■□□□□ 0.83
Smarce1O54941 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Gm27275-201ENSMUST00000184318 272 ntBASIC20.21■□□□□ 0.83
Smarce1O54941 Gm37292-201ENSMUST00000192062 758 ntBASIC20.21■□□□□ 0.83
Smarce1O54941 Gm10517-202ENSMUST00000192970 758 ntBASIC20.21■□□□□ 0.83
Smarce1O54941 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.21■□□□□ 0.83
Smarce1O54941 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarce1O54941 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Smarce1O54941 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarce1O54941 Gm28265-201ENSMUST00000188201 2319 ntBASIC20.2■□□□□ 0.82
Smarce1O54941 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Smarce1O54941 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarce1O54941 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarce1O54941 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.2■□□□□ 0.82
Smarce1O54941 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarce1O54941 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarce1O54941 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Smarce1O54941 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarce1O54941 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.2■□□□□ 0.82
Smarce1O54941 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarce1O54941 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Smarce1O54941 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Smarce1O54941 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC20.19■□□□□ 0.82
Smarce1O54941 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC20.19■□□□□ 0.82
Smarce1O54941 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.19■□□□□ 0.82
Smarce1O54941 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
Smarce1O54941 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarce1O54941 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Smarce1O54941 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Smarce1O54941 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC20.18■□□□□ 0.82
Smarce1O54941 Gm24841-201ENSMUST00000158676 357 ntBASIC20.18■□□□□ 0.82
Smarce1O54941 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms