Protein–RNA interactions for Protein: O54785

Limk2, LIM domain kinase 2, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limk2O54785 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Limk2O54785 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limk2O54785 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limk2O54785 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Limk2O54785 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
Limk2O54785 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Limk2O54785 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Limk2O54785 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Limk2O54785 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Limk2O54785 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limk2O54785 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Limk2O54785 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.24■□□□□ 0.35
Limk2O54785 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.24■□□□□ 0.35
Limk2O54785 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Limk2O54785 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.24■□□□□ 0.35
Limk2O54785 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Limk2O54785 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limk2O54785 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Limk2O54785 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Limk2O54785 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.23■□□□□ 0.35
Limk2O54785 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Limk2O54785 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Limk2O54785 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Gm27741-201ENSMUST00000185060 237 ntBASIC17.23■□□□□ 0.35
Limk2O54785 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC17.23■□□□□ 0.35
Limk2O54785 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.23■□□□□ 0.35
Limk2O54785 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limk2O54785 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Limk2O54785 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Gm18101-201ENSMUST00000215769 548 ntBASIC17.22■□□□□ 0.35
Limk2O54785 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Limk2O54785 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Limk2O54785 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limk2O54785 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.21■□□□□ 0.35
Limk2O54785 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Limk2O54785 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limk2O54785 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms