Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Clk3O35492 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Gm5643-201ENSMUST00000117081 966 ntBASIC16.19■□□□□ 0.18
Clk3O35492 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.19■□□□□ 0.18
Clk3O35492 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.19■□□□□ 0.18
Clk3O35492 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Clk3O35492 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Clk3O35492 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.18■□□□□ 0.18
Clk3O35492 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Clk3O35492 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.18■□□□□ 0.18
Clk3O35492 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC16.18■□□□□ 0.18
Clk3O35492 AC112142.1-201ENSMUST00000228796 918 ntBASIC16.18■□□□□ 0.18
Clk3O35492 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
Clk3O35492 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.18■□□□□ 0.18
Clk3O35492 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Clk3O35492 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Clk3O35492 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Clk3O35492 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.17■□□□□ 0.18
Clk3O35492 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Clk3O35492 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.17■□□□□ 0.18
Clk3O35492 Gm11643-201ENSMUST00000119578 864 ntBASIC16.17■□□□□ 0.18
Clk3O35492 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Mir2861-201ENSMUST00000175539 82 ntBASIC16.17■□□□□ 0.18
Clk3O35492 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Gm29791-202ENSMUST00000207888 369 ntBASIC16.17■□□□□ 0.18
Clk3O35492 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Clk3O35492 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Clk3O35492 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Clk3O35492 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.17■□□□□ 0.18
Clk3O35492 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Clk3O35492 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Clk3O35492 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
Clk3O35492 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.16■□□□□ 0.18
Clk3O35492 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC16.16■□□□□ 0.18
Clk3O35492 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
Clk3O35492 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC16.16■□□□□ 0.18
Clk3O35492 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Clk3O35492 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Clk3O35492 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Clk3O35492 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Clk3O35492 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Clk3O35492 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Clk3O35492 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC16.15■□□□□ 0.18
Clk3O35492 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Clk3O35492 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.15■□□□□ 0.18
Clk3O35492 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms