Protein–RNA interactions for Protein: E9PXC0

Srp54b, Signal recognition particle 54 kDa protein, mousemouse

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Srp54bE9PXC0 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Srp54bE9PXC0 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Srp54bE9PXC0 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Srp54bE9PXC0 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Gm17807-201ENSMUST00000186869 298 ntBASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC16.73■□□□□ 0.27
Srp54bE9PXC0 Gm45606-201ENSMUST00000209836 2795 ntBASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Srp54bE9PXC0 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Gm44832-201ENSMUST00000208849 2303 ntBASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Srp54bE9PXC0 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.71■□□□□ 0.26
Srp54bE9PXC0 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Gm27000-201ENSMUST00000182943 842 ntBASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Srp54bE9PXC0 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Srp54bE9PXC0 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms