Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC16.65■□□□□ 0.26
Chd3B1AR17 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Chd3B1AR17 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC16.65■□□□□ 0.26
Chd3B1AR17 Gm17971-201ENSMUST00000190239 806 ntBASIC16.65■□□□□ 0.26
Chd3B1AR17 Gm8969-201ENSMUST00000199694 526 ntBASIC16.65■□□□□ 0.26
Chd3B1AR17 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Chd3B1AR17 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
Chd3B1AR17 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
Chd3B1AR17 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
Chd3B1AR17 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Chd3B1AR17 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.64■□□□□ 0.25
Chd3B1AR17 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chd3B1AR17 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.63■□□□□ 0.25
Chd3B1AR17 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC16.63■□□□□ 0.25
Chd3B1AR17 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC16.63■□□□□ 0.25
Chd3B1AR17 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Chd3B1AR17 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC16.63■□□□□ 0.25
Chd3B1AR17 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.63■□□□□ 0.25
Chd3B1AR17 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
Chd3B1AR17 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chd3B1AR17 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC16.62■□□□□ 0.25
Chd3B1AR17 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC16.62■□□□□ 0.25
Chd3B1AR17 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Chd3B1AR17 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Chd3B1AR17 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.62■□□□□ 0.25
Chd3B1AR17 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chd3B1AR17 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.62■□□□□ 0.25
Chd3B1AR17 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC16.61■□□□□ 0.25
Chd3B1AR17 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chd3B1AR17 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Chd3B1AR17 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chd3B1AR17 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chd3B1AR17 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.61■□□□□ 0.25
Chd3B1AR17 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chd3B1AR17 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Chd3B1AR17 Gm27741-201ENSMUST00000185060 237 ntBASIC16.61■□□□□ 0.25
Chd3B1AR17 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chd3B1AR17 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chd3B1AR17 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.61■□□□□ 0.25
Chd3B1AR17 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Chd3B1AR17 Gm45606-201ENSMUST00000209836 2795 ntBASIC16.6■□□□□ 0.25
Chd3B1AR17 Olfr129-201ENSMUST00000122318 993 ntBASIC16.6■□□□□ 0.25
Chd3B1AR17 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Gm17807-201ENSMUST00000186869 298 ntBASIC16.6■□□□□ 0.25
Chd3B1AR17 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC16.6■□□□□ 0.25
Chd3B1AR17 AC125350.1-201ENSMUST00000225115 903 ntBASIC16.6■□□□□ 0.25
Chd3B1AR17 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Gm11950-201ENSMUST00000121615 838 ntBASIC16.6■□□□□ 0.25
Chd3B1AR17 Gm28033-201ENSMUST00000184224 96 ntBASIC16.6■□□□□ 0.25
Chd3B1AR17 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chd3B1AR17 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms