Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trav4-3A0A0B4J1K1 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trav4-3A0A0B4J1K1 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trav4-3A0A0B4J1K1 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Gm43072-201ENSMUST00000200283 1671 ntBASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav4-3A0A0B4J1K1 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Tfap2a-209ENSMUST00000225180 1828 ntBASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Gm43060-201ENSMUST00000200621 289 ntBASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav4-3A0A0B4J1K1 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Gm13534-201ENSMUST00000121169 513 ntBASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Wdr70-203ENSMUST00000227371 1130 ntBASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav4-3A0A0B4J1K1 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms