Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm4468-201ENSMUST00000170206 294 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm19901-201ENSMUST00000192191 495 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm37281-201ENSMUST00000192412 439 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm23128-202ENSMUST00000196578 133 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 5430435K18Rik-201ENSMUST00000202597 661 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 4930598N05Rik-207ENSMUST00000208997 83 ntTSL 5 BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm29521-204ENSMUST00000216859 279 ntTSL 5 BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Snord14d-201ENSMUST00000083424 86 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Mir146-201ENSMUST00000083667 65 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Tlr7-202ENSMUST00000112161 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Olfr606-203ENSMUST00000217250 2313 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Mgat4c-211ENSMUST00000163753 3862 ntAPPRIS P1 TSL 3 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Olfr394-203ENSMUST00000216608 5628 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Zfp638-212ENSMUST00000203891 3968 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Ighv1-54-201ENSMUST00000103525 377 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm25728-201ENSMUST00000104525 159 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm12304-201ENSMUST00000120312 385 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm25945-201ENSMUST00000122484 135 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm15008-201ENSMUST00000147429 460 ntTSL 3 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm24879-201ENSMUST00000158386 143 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm24922-201ENSMUST00000158511 102 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm6660-201ENSMUST00000179149 468 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm27698-201ENSMUST00000184060 249 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm40331-201ENSMUST00000198430 217 ntTSL 3 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm34599-201ENSMUST00000198924 288 ntTSL 3 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm44563-201ENSMUST00000207958 178 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 AC093316.2-201ENSMUST00000220015 172 ntTSL 5 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 AC098718.2-201ENSMUST00000226822 285 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 AC127578.1-201ENSMUST00000227289 93 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 n-R5s176-201ENSMUST00000082683 109 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Mir384-201ENSMUST00000083565 88 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm12580-201ENSMUST00000127456 1751 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm37063-201ENSMUST00000194678 3520 ntBASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Olfr772-202ENSMUST00000214672 2955 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Olfr165-202ENSMUST00000206110 1862 ntAPPRIS ALT1 TSL 3 BASIC2.5□□□□□ -2.01
Col28a1Q2UY11 Gm43889-201ENSMUST00000203950 3681 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Gm25500-201ENSMUST00000104426 123 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Gm15936-201ENSMUST00000118706 460 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Gm13467-201ENSMUST00000145568 281 ntTSL 5 BASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Gm23980-201ENSMUST00000157135 158 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Gm23331-201ENSMUST00000157423 108 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Gm22097-201ENSMUST00000157929 278 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Vmn2r-ps78-201ENSMUST00000173350 308 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Mir5118-201ENSMUST00000175551 67 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Gtpbp4-ps1-201ENSMUST00000184732 249 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Trbv6-201ENSMUST00000193743 276 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Snord80-202ENSMUST00000199023 77 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 AC192091.2-201ENSMUST00000217869 117 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 AC164561.1-201ENSMUST00000220414 115 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 AC122418.1-201ENSMUST00000225012 511 ntBASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Olfr394-202ENSMUST00000214284 5562 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
Col28a1Q2UY11 Olfr355-202ENSMUST00000213574 3610 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm14073-201ENSMUST00000117344 381 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm23600-201ENSMUST00000157260 71 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm24475-201ENSMUST00000157435 143 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm24959-201ENSMUST00000157924 146 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm25935-201ENSMUST00000178746 107 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm37807-201ENSMUST00000194310 190 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm23370-202ENSMUST00000197008 129 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm42774-201ENSMUST00000198854 283 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 CAAA01090905.1-201ENSMUST00000219056 426 ntTSL 2 BASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm9174-201ENSMUST00000078149 255 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm22297-201ENSMUST00000083312 106 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Gm24164-201ENSMUST00000093663 104 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Olfr869-201ENSMUST00000213024 1783 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
Col28a1Q2UY11 AC125223.3-201ENSMUST00000223588 2067 ntBASIC2.48□□□□□ -2.01
Col28a1Q2UY11 Zfp953-201ENSMUST00000081582 4677 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Zfp980-202ENSMUST00000180014 1938 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm12934-201ENSMUST00000119221 343 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm14748-201ENSMUST00000119819 411 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm25269-201ENSMUST00000122601 104 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm22883-201ENSMUST00000157376 106 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm24015-201ENSMUST00000157725 232 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm23642-201ENSMUST00000157858 258 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm22316-201ENSMUST00000158012 216 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm25494-201ENSMUST00000158143 100 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm22384-201ENSMUST00000158187 104 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm20513-201ENSMUST00000174074 537 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Obox4-ps37-201ENSMUST00000177223 276 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm43680-201ENSMUST00000199466 340 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Mir9-1-201ENSMUST00000199907 89 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Mir721-201ENSMUST00000200230 88 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Igkv1-136-201ENSMUST00000200635 297 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm45013-201ENSMUST00000206883 178 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 AC150901.1-201ENSMUST00000208407 145 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm10360-201ENSMUST00000097219 272 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Gm10813-201ENSMUST00000099936 90 ntBASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Olfr339-202ENSMUST00000216645 4867 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Adgrg4-205ENSMUST00000154818 8857 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
Col28a1Q2UY11 Nlrp9c-202ENSMUST00000085944 3216 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Vmn1r185-208ENSMUST00000228004 5682 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Gm24263-201ENSMUST00000104059 107 ntBASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Gm22957-201ENSMUST00000122511 123 ntBASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Gm25716-201ENSMUST00000158628 104 ntBASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Gm21060-201ENSMUST00000179346 168 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Mir8090-201ENSMUST00000185078 136 ntBASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Gm28650-201ENSMUST00000188413 411 ntBASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Gm29553-201ENSMUST00000189692 279 ntBASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Gm38171-201ENSMUST00000195716 478 ntTSL 3 BASIC2.46□□□□□ -2.02
Col28a1Q2UY11 Trav14-1-201ENSMUST00000198297 399 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
Retrieved 100 of 76,532 protein–RNA pairs in 85.1 ms