Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm23472-201ENSMUST00000101806 191 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm23705-201ENSMUST00000104370 130 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm14803-201ENSMUST00000117163 361 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm15497-201ENSMUST00000119137 551 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm12434-201ENSMUST00000141580 653 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm22551-201ENSMUST00000157795 103 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm24497-201ENSMUST00000177868 191 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Mir7017-201ENSMUST00000184894 62 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Sprr2h-202ENSMUST00000191886 297 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm44429-201ENSMUST00000203542 186 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Vmn1r-ps16-201ENSMUST00000204747 105 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Selenok-ps5-201ENSMUST00000221048 278 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 2210407C18Rik-201ENSMUST00000048801 876 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm25930-201ENSMUST00000082785 107 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Gm23444-201ENSMUST00000082922 191 ntBASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Slc16a7-206ENSMUST00000211781 10981 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
Ddb1Q3U1J4 Olfr58-202ENSMUST00000215112 2454 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Gm12080-201ENSMUST00000119821 1883 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Gm12771-201ENSMUST00000120246 135 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Gm23470-201ENSMUST00000157129 120 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Gm23589-201ENSMUST00000157660 105 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Gm24771-201ENSMUST00000158508 137 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Snord53-201ENSMUST00000175146 78 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Gm29597-201ENSMUST00000188035 308 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Mir497-201ENSMUST00000200557 84 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Hmgb1l-201ENSMUST00000082150 571 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Gm18751-201ENSMUST00000185777 2013 ntBASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Olfr1218-203ENSMUST00000215048 3900 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Ddb1Q3U1J4 Olfr1202-202ENSMUST00000214703 3665 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Il23r-201ENSMUST00000118364 2488 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Mir1b-201ENSMUST00000117012 122 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm12941-201ENSMUST00000117934 220 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm5396-201ENSMUST00000121222 532 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm12155-201ENSMUST00000121267 160 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm16355-201ENSMUST00000128606 231 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm26186-201ENSMUST00000157689 125 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm25664-201ENSMUST00000157697 107 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm22315-201ENSMUST00000158010 143 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm22382-201ENSMUST00000158185 130 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm24177-201ENSMUST00000158927 131 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm22853-201ENSMUST00000174974 131 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Mir6405-201ENSMUST00000184584 124 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm37515-201ENSMUST00000193321 3817 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm43562-201ENSMUST00000196439 238 ntTSL 3 BASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Mir3073b-201ENSMUST00000199383 60 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm31447-201ENSMUST00000222345 384 ntTSL 3 BASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 AC124104.1-201ENSMUST00000226279 417 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Mir29b-2-201ENSMUST00000083478 81 ntBASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Tlr7-201ENSMUST00000060719 3776 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Ddb1Q3U1J4 Gm12580-201ENSMUST00000127456 1751 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm15846-201ENSMUST00000116022 320 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Rps15a-ps6-201ENSMUST00000117476 393 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm12304-201ENSMUST00000120312 385 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm24892-201ENSMUST00000122747 104 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm22984-201ENSMUST00000122751 122 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm15008-201ENSMUST00000147429 460 ntTSL 3 BASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm22517-201ENSMUST00000158265 136 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm23005-201ENSMUST00000158950 136 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm16405-201ENSMUST00000169247 468 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm7958-201ENSMUST00000178255 468 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm7950-201ENSMUST00000179633 468 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm27699-201ENSMUST00000183553 180 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm27803-201ENSMUST00000183763 119 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm29865-201ENSMUST00000197726 451 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm45288-201ENSMUST00000210236 151 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 AC121942.2-201ENSMUST00000223824 600 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm9795-201ENSMUST00000062156 693 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Gm23462-201ENSMUST00000083264 104 ntBASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Olfr1229-203ENSMUST00000214593 3404 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
Ddb1Q3U1J4 Snord14c-201ENSMUST00000101927 86 ntBASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Gm25094-201ENSMUST00000103992 131 ntBASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Gm13467-201ENSMUST00000145568 281 ntTSL 5 BASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Trbv6-201ENSMUST00000193743 276 ntBASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Gm43587-201ENSMUST00000199590 204 ntBASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 AC167669.4-201ENSMUST00000225967 140 ntBASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Gm5899-201ENSMUST00000071770 270 ntBASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Gm25636-201ENSMUST00000082666 133 ntBASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Tlr3-202ENSMUST00000167106 4093 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Ddb1Q3U1J4 Gm43780-201ENSMUST00000196510 3600 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Cd209e-201ENSMUST00000033888 1802 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm24116-201ENSMUST00000103975 107 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm24126-201ENSMUST00000104111 106 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm16533-201ENSMUST00000140035 228 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm22118-201ENSMUST00000175593 171 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm20630-201ENSMUST00000177387 551 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm38311-201ENSMUST00000192945 165 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm38171-201ENSMUST00000195716 478 ntTSL 3 BASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Olfr1478-ps1-201ENSMUST00000208393 391 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 AC188459.1-201ENSMUST00000216651 300 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 AC115735.2-201ENSMUST00000227135 351 ntBASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Olfr1025-ps1-202ENSMUST00000213474 3578 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Ranbp2-201ENSMUST00000003310 9608 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
Ddb1Q3U1J4 Gm4746-201ENSMUST00000120395 2406 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Vmn1r29-203ENSMUST00000227761 4671 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Vmn1r29-205ENSMUST00000228909 4658 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Olfr777-202ENSMUST00000204573 5407 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm26077-201ENSMUST00000104064 123 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm25390-201ENSMUST00000157341 103 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm23588-201ENSMUST00000157659 99 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm24388-201ENSMUST00000177872 107 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 133.9 ms