Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm24726-201ENSMUST00000158232 121 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Pak3-210ENSMUST00000172330 8135 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm20718-201ENSMUST00000176058 259 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Mir669k-201ENSMUST00000177742 127 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Mir466b-1-201ENSMUST00000177988 82 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm25673-201ENSMUST00000179957 127 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm25528-201ENSMUST00000180264 132 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Mir6386-201ENSMUST00000183558 104 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm27921-201ENSMUST00000183968 108 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm27520-201ENSMUST00000184872 81 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 1700010I02Rik-202ENSMUST00000188525 430 ntTSL 3 BASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm37923-201ENSMUST00000191624 161 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm18982-201ENSMUST00000198118 529 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Igkv13-78-1-201ENSMUST00000199298 200 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm34314-201ENSMUST00000203622 367 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Olfr186-203ENSMUST00000216415 2323 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Col28a1Q2UY11 AC165106.2-201ENSMUST00000226749 97 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 AC154213.2-201ENSMUST00000227138 187 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Vmn2r72-201ENSMUST00000063425 2571 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm26495-201ENSMUST00000083152 137 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Mir302d-201ENSMUST00000083513 66 ntBASIC2.55□□□□□ -2
Col28a1Q2UY11 Zfp40-206ENSMUST00000172177 2736 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Col28a1Q2UY11 Gm44644-202ENSMUST00000208825 3133 ntTSL 2 BASIC2.54□□□□□ -2
Col28a1Q2UY11 AC117199.1-201ENSMUST00000219940 3132 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm22782-201ENSMUST00000104082 132 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm22779-201ENSMUST00000104085 107 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm22486-201ENSMUST00000116815 137 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm25321-201ENSMUST00000122558 102 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm22215-201ENSMUST00000157558 96 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm22767-201ENSMUST00000158365 165 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 AC154297.1-201ENSMUST00000171334 397 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Mir3076-201ENSMUST00000175415 60 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Mir5136-201ENSMUST00000175573 76 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm26200-201ENSMUST00000180273 79 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm27379-201ENSMUST00000183730 123 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm28000-201ENSMUST00000184380 85 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm29155-202ENSMUST00000186289 216 ntTSL 5 BASIC2.54□□□□□ -2
Col28a1Q2UY11 Mrgprb1-203ENSMUST00000188918 435 ntTSL 3 BASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm45452-201ENSMUST00000210905 177 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm25812-201ENSMUST00000082751 103 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm24356-201ENSMUST00000082859 106 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm23453-201ENSMUST00000083326 106 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 AC117226.1-201ENSMUST00000221635 3737 ntBASIC2.54□□□□□ -2
Col28a1Q2UY11 Olfr103-202ENSMUST00000173472 3079 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
Col28a1Q2UY11 Gm37928-201ENSMUST00000193265 4131 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Zfp280c-202ENSMUST00000076635 4355 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
Col28a1Q2UY11 Olfr1325-203ENSMUST00000216108 3535 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
Col28a1Q2UY11 Mir878-201ENSMUST00000104680 78 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm26247-201ENSMUST00000116702 91 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm11356-201ENSMUST00000118974 192 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm23886-201ENSMUST00000122684 313 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm25153-201ENSMUST00000157118 156 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm26406-201ENSMUST00000158503 124 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Mir7242-201ENSMUST00000183710 79 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm27761-201ENSMUST00000184091 131 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm28376-201ENSMUST00000186604 176 ntTSL 5 BASIC2.53□□□□□ -2
Col28a1Q2UY11 Igkv13-54-1-201ENSMUST00000196495 303 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm42623-201ENSMUST00000197225 379 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm44481-201ENSMUST00000197288 84 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Mir1a-2-201ENSMUST00000198520 72 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm44339-201ENSMUST00000200598 84 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 AC069074.2-201ENSMUST00000217819 428 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 AC159188.1-201ENSMUST00000225198 526 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 AC124182.1-201ENSMUST00000227091 321 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm25813-201ENSMUST00000082748 191 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm24410-201ENSMUST00000083433 107 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm22828-201ENSMUST00000083768 107 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm23039-201ENSMUST00000083870 161 ntBASIC2.53□□□□□ -2
Col28a1Q2UY11 Ifi203-201ENSMUST00000042228 3754 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
Col28a1Q2UY11 Gm12550-201ENSMUST00000118478 329 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm7209-201ENSMUST00000122339 333 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm25543-201ENSMUST00000122678 312 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm26411-201ENSMUST00000157668 107 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm24358-201ENSMUST00000158424 288 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm24131-201ENSMUST00000158539 107 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm22664-201ENSMUST00000158719 105 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm24086-201ENSMUST00000175171 98 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm24816-201ENSMUST00000175311 151 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm27220-201ENSMUST00000183453 262 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm38311-201ENSMUST00000192945 165 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm43220-201ENSMUST00000199299 282 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Olfr454-ps1-201ENSMUST00000205206 348 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm44520-201ENSMUST00000205447 802 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 AC174457.1-201ENSMUST00000215932 226 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 AL627387.1-201ENSMUST00000226063 250 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm24966-201ENSMUST00000082443 79 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Olfr352-202ENSMUST00000217325 3337 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm42785-201ENSMUST00000202316 3835 ntBASIC2.52□□□□□ -2.01
Col28a1Q2UY11 Gm43780-201ENSMUST00000196510 3600 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Olfr847-202ENSMUST00000216839 2385 ntAPPRIS P1 TSL 3 BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm13479-201ENSMUST00000130773 4722 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Rgs18-201ENSMUST00000027603 2031 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Zfp119a-201ENSMUST00000079642 2018 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Rex2-201ENSMUST00000075775 3993 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Olfr896-ps1-203ENSMUST00000216276 2921 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm19541-201ENSMUST00000184488 2868 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm23128-201ENSMUST00000104257 132 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Mir1b-201ENSMUST00000117012 122 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm15714-201ENSMUST00000117168 250 ntBASIC2.51□□□□□ -2.01
Col28a1Q2UY11 Gm23223-201ENSMUST00000158119 127 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 76,532 protein–RNA pairs in 87.6 ms