Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Atp11c-205ENSMUST00000154051 6039 ntTSL 5 BASIC2.52□□□□□ -2.01
ShhQ62226 Olfr58-202ENSMUST00000215112 2454 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
ShhQ62226 Zfp985-201ENSMUST00000081742 2762 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ShhQ62226 Gm9218-201ENSMUST00000121068 2694 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm23951-201ENSMUST00000104029 132 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm12686-201ENSMUST00000120546 397 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm25625-201ENSMUST00000157221 96 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm24443-201ENSMUST00000157242 132 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm22215-201ENSMUST00000157558 96 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm24388-201ENSMUST00000177872 107 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm25020-201ENSMUST00000178071 107 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm21798-201ENSMUST00000180105 261 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
ShhQ62226 Gm29865-201ENSMUST00000197726 451 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
ShhQ62226 Gm34411-201ENSMUST00000201180 280 ntTSL 3 BASIC2.52□□□□□ -2.01
ShhQ62226 Gm44459-201ENSMUST00000203926 160 ntBASIC2.52□□□□□ -2.01
ShhQ62226 AC115735.2-201ENSMUST00000227135 351 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm22622-201ENSMUST00000082870 129 ntBASIC2.52□□□□□ -2.01
ShhQ62226 Gm14327-202ENSMUST00000108935 1451 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ShhQ62226 Vmn2r70-201ENSMUST00000168230 2565 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
ShhQ62226 Ighv9-3-201ENSMUST00000103473 351 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
ShhQ62226 Gm24116-201ENSMUST00000103975 107 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm26249-201ENSMUST00000116708 118 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm13588-201ENSMUST00000120026 135 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm25945-201ENSMUST00000122484 135 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm22027-201ENSMUST00000122737 127 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm14773-201ENSMUST00000125932 451 ntTSL 2 BASIC2.51□□□□□ -2.01
ShhQ62226 Gm12434-201ENSMUST00000141580 653 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
ShhQ62226 Gm25333-201ENSMUST00000158035 246 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm24729-201ENSMUST00000158225 137 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm7582-201ENSMUST00000160831 603 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm22118-201ENSMUST00000175593 171 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm22621-201ENSMUST00000179678 74 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm27220-201ENSMUST00000183453 262 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Mir8116-201ENSMUST00000184134 97 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm27694-201ENSMUST00000184740 86 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm27545-201ENSMUST00000184755 202 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Mir3569-201ENSMUST00000185080 58 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Topbp1-ps1-201ENSMUST00000187120 184 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm29553-201ENSMUST00000189692 279 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Gm29167-201ENSMUST00000190024 377 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Mir465d-201ENSMUST00000196314 58 ntBASIC2.51□□□□□ -2.01
ShhQ62226 AC158597.1-201ENSMUST00000216234 150 ntBASIC2.51□□□□□ -2.01
ShhQ62226 AC122834.1-201ENSMUST00000227182 425 ntBASIC2.51□□□□□ -2.01
ShhQ62226 AC165415.1-201ENSMUST00000228924 273 ntBASIC2.51□□□□□ -2.01
ShhQ62226 Uty-201ENSMUST00000069309 5208 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
ShhQ62226 Zfp280c-202ENSMUST00000076635 4355 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
ShhQ62226 Gm25565-201ENSMUST00000104605 105 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Mir466k-201ENSMUST00000116774 122 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Gm12815-201ENSMUST00000121737 135 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Gm23640-201ENSMUST00000157860 104 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Mir6336-201ENSMUST00000183581 130 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Mir6353-201ENSMUST00000183596 113 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Gm37089-201ENSMUST00000195616 129 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Gm43193-201ENSMUST00000197732 441 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Gm35077-201ENSMUST00000204999 275 ntTSL 3 BASIC2.5□□□□□ -2.01
ShhQ62226 AC122194.1-201ENSMUST00000220549 293 ntBASIC2.5□□□□□ -2.01
ShhQ62226 AC115735.1-201ENSMUST00000226633 350 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Gm23040-201ENSMUST00000083869 163 ntBASIC2.5□□□□□ -2.01
ShhQ62226 Tex16-201ENSMUST00000038546 3972 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
ShhQ62226 Ifi214-203ENSMUST00000139092 2888 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
ShhQ62226 Gm24423-201ENSMUST00000101982 106 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Igkv2-109-201ENSMUST00000103322 374 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
ShhQ62226 Gm23013-201ENSMUST00000104146 106 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Rps13-ps8-201ENSMUST00000118906 401 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm12865-201ENSMUST00000137353 326 ntTSL 2 BASIC2.49□□□□□ -2.01
ShhQ62226 Gm23982-201ENSMUST00000157141 106 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm24911-201ENSMUST00000157292 136 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm22537-201ENSMUST00000158172 199 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm25866-201ENSMUST00000158245 112 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm25863-201ENSMUST00000158249 329 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm23258-201ENSMUST00000158319 106 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm26287-201ENSMUST00000158887 81 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Ear-ps8-201ENSMUST00000161935 354 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Snord53-201ENSMUST00000175146 78 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Obox4-ps37-201ENSMUST00000177223 276 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm25457-201ENSMUST00000179509 107 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm24415-201ENSMUST00000180218 107 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm5224-201ENSMUST00000183060 350 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm45092-201ENSMUST00000205944 545 ntTSL 3 BASIC2.49□□□□□ -2.01
ShhQ62226 Gm10192-201ENSMUST00000086672 327 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
ShhQ62226 AC117199.1-201ENSMUST00000219940 3132 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm43780-201ENSMUST00000196510 3600 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Vmn2r74-201ENSMUST00000166355 2562 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
ShhQ62226 AC124561.2-201ENSMUST00000226657 1973 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm37928-201ENSMUST00000193265 4131 ntBASIC2.49□□□□□ -2.01
ShhQ62226 Gm23551-201ENSMUST00000116852 121 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm14843-201ENSMUST00000119596 212 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm14846-201ENSMUST00000121868 216 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm14978-201ENSMUST00000129000 304 ntTSL 3 BASIC2.48□□□□□ -2.01
ShhQ62226 Gm22330-201ENSMUST00000158068 115 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm25749-201ENSMUST00000175485 111 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm25470-201ENSMUST00000175576 111 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm27330-201ENSMUST00000184689 132 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm29005-201ENSMUST00000186773 320 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm37715-201ENSMUST00000193206 235 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm36546-201ENSMUST00000206372 230 ntTSL 5 BASIC2.48□□□□□ -2.01
ShhQ62226 Gm45859-201ENSMUST00000212794 214 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Gm25410-201ENSMUST00000083758 137 ntBASIC2.48□□□□□ -2.01
ShhQ62226 Olfr1206-202ENSMUST00000216950 3303 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
ShhQ62226 AC157570.1-201ENSMUST00000218052 3778 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 76,532 protein–RNA pairs in 86.3 ms