Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC188459.1-201ENSMUST00000216651 300 ntBASIC2.58□□□□□ -2
ShhQ62226 AC122484.1-201ENSMUST00000221578 177 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm18617-201ENSMUST00000222311 259 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm22294-201ENSMUST00000083308 104 ntBASIC2.58□□□□□ -2
ShhQ62226 Mir29b-2-201ENSMUST00000083478 81 ntBASIC2.58□□□□□ -2
ShhQ62226 Vmn1r75-206ENSMUST00000228463 6508 ntAPPRIS P2 BASIC2.58□□□□□ -2
ShhQ62226 Gm42684-201ENSMUST00000197663 3615 ntBASIC2.57□□□□□ -2
ShhQ62226 Gm25875-201ENSMUST00000104323 107 ntBASIC2.57□□□□□ -2
ShhQ62226 Mir669d-201ENSMUST00000104644 121 ntBASIC2.57□□□□□ -2
ShhQ62226 Gm15846-201ENSMUST00000116022 320 ntBASIC2.57□□□□□ -2
ShhQ62226 Gm26277-201ENSMUST00000157097 152 ntBASIC2.57□□□□□ -2
ShhQ62226 Gm20718-201ENSMUST00000176058 259 ntBASIC2.57□□□□□ -2
ShhQ62226 Snora15-201ENSMUST00000177461 131 ntBASIC2.57□□□□□ -2
ShhQ62226 Mir7013-201ENSMUST00000183540 72 ntBASIC2.57□□□□□ -2
ShhQ62226 Gm5269-201ENSMUST00000183590 138 ntAPPRIS P1 BASIC2.57□□□□□ -2
ShhQ62226 Gm32250-201ENSMUST00000191885 322 ntTSL 3 BASIC2.57□□□□□ -2
ShhQ62226 AL603834.1-201ENSMUST00000198372 121 ntBASIC2.57□□□□□ -2
ShhQ62226 Mir9-1-201ENSMUST00000199907 89 ntBASIC2.57□□□□□ -2
ShhQ62226 Gm45288-201ENSMUST00000210236 151 ntBASIC2.57□□□□□ -2
ShhQ62226 Olfr1370-201ENSMUST00000058168 951 ntAPPRIS P1 BASIC2.57□□□□□ -2
ShhQ62226 n-R5s176-201ENSMUST00000082683 109 ntBASIC2.57□□□□□ -2
ShhQ62226 Olfr896-ps1-203ENSMUST00000216276 2921 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
ShhQ62226 Nexn-207ENSMUST00000198460 1785 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
ShhQ62226 Gm22984-201ENSMUST00000122751 122 ntBASIC2.56□□□□□ -2
ShhQ62226 5330434G04Rik-201ENSMUST00000130264 511 ntTSL 3 BASIC2.56□□□□□ -2
ShhQ62226 Gm23588-201ENSMUST00000157659 99 ntBASIC2.56□□□□□ -2
ShhQ62226 Gm24879-201ENSMUST00000158386 143 ntBASIC2.56□□□□□ -2
ShhQ62226 Mir3075-201ENSMUST00000175340 85 ntBASIC2.56□□□□□ -2
ShhQ62226 Gm27700-201ENSMUST00000185003 81 ntBASIC2.56□□□□□ -2
ShhQ62226 Gm8739-201ENSMUST00000185962 181 ntTSL 5 BASIC2.56□□□□□ -2
ShhQ62226 Sprr2h-202ENSMUST00000191886 297 ntTSL 1 (best) BASIC2.56□□□□□ -2
ShhQ62226 Gm38311-201ENSMUST00000192945 165 ntBASIC2.56□□□□□ -2
ShhQ62226 Olfr1070-ps1-201ENSMUST00000215939 388 ntBASIC2.56□□□□□ -2
ShhQ62226 CAAA01090905.1-201ENSMUST00000219056 426 ntTSL 2 BASIC2.56□□□□□ -2
ShhQ62226 Gm31447-201ENSMUST00000222345 384 ntTSL 3 BASIC2.56□□□□□ -2
ShhQ62226 AC167669.4-201ENSMUST00000225967 140 ntBASIC2.56□□□□□ -2
ShhQ62226 2210407C18Rik-201ENSMUST00000048801 876 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
ShhQ62226 Gm22978-201ENSMUST00000082607 160 ntBASIC2.56□□□□□ -2
ShhQ62226 Gm22358-201ENSMUST00000082877 122 ntBASIC2.56□□□□□ -2
ShhQ62226 Gm25188-201ENSMUST00000083913 122 ntBASIC2.56□□□□□ -2
ShhQ62226 Ccdc18-201ENSMUST00000047677 5336 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
ShhQ62226 Olfr166-202ENSMUST00000213531 4205 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
ShhQ62226 Olfr652-204ENSMUST00000219111 5329 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
ShhQ62226 Gm13757-202ENSMUST00000179450 4383 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
ShhQ62226 Snord14c-201ENSMUST00000101927 86 ntBASIC2.55□□□□□ -2
ShhQ62226 Gm10563-201ENSMUST00000115821 237 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
ShhQ62226 Gm24274-201ENSMUST00000116787 124 ntBASIC2.55□□□□□ -2
ShhQ62226 Ppp1r2-ps7-201ENSMUST00000140102 609 ntBASIC2.55□□□□□ -2
ShhQ62226 Gm15008-201ENSMUST00000147429 460 ntTSL 3 BASIC2.55□□□□□ -2
ShhQ62226 Gm24075-201ENSMUST00000158175 72 ntBASIC2.55□□□□□ -2
ShhQ62226 Gm16111-201ENSMUST00000162128 285 ntBASIC2.55□□□□□ -2
ShhQ62226 Gm28921-201ENSMUST00000190219 378 ntBASIC2.55□□□□□ -2
ShhQ62226 AC153526.2-201ENSMUST00000218206 2031 ntBASIC2.55□□□□□ -2
ShhQ62226 AC102369.2-201ENSMUST00000219725 1679 ntBASIC2.55□□□□□ -2
ShhQ62226 Gm46997-201ENSMUST00000222108 217 ntBASIC2.55□□□□□ -2
ShhQ62226 AC121942.2-201ENSMUST00000223824 600 ntBASIC2.55□□□□□ -2
ShhQ62226 Gm10509-201ENSMUST00000097384 259 ntAPPRIS P1 BASIC2.55□□□□□ -2
ShhQ62226 Gm45844-205ENSMUST00000210333 3861 ntAPPRIS P5 TSL 1 (best) BASIC2.55□□□□□ -2
ShhQ62226 Olfr1256-203ENSMUST00000213833 6081 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
ShhQ62226 AC164164.1-201ENSMUST00000223245 2340 ntBASIC2.54□□□□□ -2
ShhQ62226 Traj56-201ENSMUST00000103689 63 ntAPPRIS P1 BASIC2.54□□□□□ -2
ShhQ62226 Mir1b-201ENSMUST00000117012 122 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm16171-201ENSMUST00000118004 324 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm12550-201ENSMUST00000118478 329 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm12646-201ENSMUST00000119144 238 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm5396-201ENSMUST00000121222 532 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm22315-201ENSMUST00000158010 143 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm23895-201ENSMUST00000158108 160 ntBASIC2.54□□□□□ -2
ShhQ62226 4930473D10Rik-201ENSMUST00000161975 487 ntTSL 1 (best) BASIC2.54□□□□□ -2
ShhQ62226 Gm24818-201ENSMUST00000175093 161 ntBASIC2.54□□□□□ -2
ShhQ62226 Snord93-201ENSMUST00000175580 71 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm38171-201ENSMUST00000195716 478 ntTSL 3 BASIC2.54□□□□□ -2
ShhQ62226 Gm9967-203ENSMUST00000206903 408 ntTSL 3 BASIC2.54□□□□□ -2
ShhQ62226 Olfr511-ps1-201ENSMUST00000207188 217 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm6796-201ENSMUST00000211919 243 ntBASIC2.54□□□□□ -2
ShhQ62226 Gm5899-201ENSMUST00000071770 270 ntBASIC2.54□□□□□ -2
ShhQ62226 N4bp2l2-201ENSMUST00000118316 8982 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
ShhQ62226 Vmn1r87-202ENSMUST00000211249 1835 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
ShhQ62226 Olfr1218-203ENSMUST00000215048 3900 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
ShhQ62226 Gm37479-201ENSMUST00000194169 3841 ntBASIC2.53□□□□□ -2
ShhQ62226 Igkv17-127-201ENSMUST00000103309 341 ntAPPRIS ALT2 BASIC2.53□□□□□ -2
ShhQ62226 Igkv17-121-201ENSMUST00000103315 350 ntAPPRIS ALT2 BASIC2.53□□□□□ -2
ShhQ62226 Traj6-201ENSMUST00000103734 62 ntAPPRIS P1 BASIC2.53□□□□□ -2
ShhQ62226 Gm24126-201ENSMUST00000104111 106 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm25500-201ENSMUST00000104426 123 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm12155-201ENSMUST00000121267 160 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm16533-201ENSMUST00000140035 228 ntBASIC2.53□□□□□ -2
ShhQ62226 Agmo-205ENSMUST00000160768 741 ntTSL 1 (best) BASIC2.53□□□□□ -2
ShhQ62226 Gm27271-201ENSMUST00000183509 170 ntBASIC2.53□□□□□ -2
ShhQ62226 Mir6386-201ENSMUST00000183558 104 ntBASIC2.53□□□□□ -2
ShhQ62226 Mir6399-201ENSMUST00000184050 84 ntBASIC2.53□□□□□ -2
ShhQ62226 Trbv6-201ENSMUST00000193743 276 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm45879-201ENSMUST00000212521 392 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm9795-201ENSMUST00000062156 693 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm26494-201ENSMUST00000083154 143 ntBASIC2.53□□□□□ -2
ShhQ62226 Mir124a-3-201ENSMUST00000083520 68 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm24493-201ENSMUST00000083805 143 ntBASIC2.53□□□□□ -2
ShhQ62226 Mir127-201ENSMUST00000093568 70 ntBASIC2.53□□□□□ -2
ShhQ62226 Gm10720-201ENSMUST00000099050 669 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
ShhQ62226 Vmn2r66-201ENSMUST00000124773 2556 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2.01
Retrieved 100 of 76,532 protein–RNA pairs in 89.4 ms