| Hoxa4 | P06798 | Snhg14-213 | ENSMUST00000190666 | 3708 nt | TSL 1 (best) BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Zfp984-201 | ENSMUST00000105734 | 2729 nt | APPRIS P1 TSL 3 BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | E430014B02Rik-201 | ENSMUST00000194215 | 3156 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gpr174-207 | ENSMUST00000178838 | 4955 nt | APPRIS P1 TSL 2 BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AW554918-203 | ENSMUST00000100131 | 1684 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm45461-201 | ENSMUST00000211726 | 4535 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25943-201 | ENSMUST00000103791 | 90 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir466b-7-201 | ENSMUST00000103804 | 88 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir466b-5-201 | ENSMUST00000103900 | 88 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm12941-201 | ENSMUST00000117934 | 220 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm11785-201 | ENSMUST00000120165 | 601 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25321-201 | ENSMUST00000122558 | 102 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm2830-201 | ENSMUST00000140330 | 385 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm13467-201 | ENSMUST00000145568 | 281 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23196-201 | ENSMUST00000158806 | 107 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Trav5n-3-201 | ENSMUST00000164511 | 270 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm17186-201 | ENSMUST00000171742 | 456 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Vmn2r-ps116-201 | ENSMUST00000175997 | 126 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir466b-4-201 | ENSMUST00000178801 | 90 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25285-201 | ENSMUST00000178951 | 90 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22621-201 | ENSMUST00000179678 | 74 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir466b-6-201 | ENSMUST00000180061 | 90 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir466c-2-201 | ENSMUST00000180211 | 90 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29429-201 | ENSMUST00000187071 | 121 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm44476-201 | ENSMUST00000196225 | 91 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC105958.2-201 | ENSMUST00000214167 | 191 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Defb39-201 | ENSMUST00000075504 | 252 nt | APPRIS P1 TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Snord14d-201 | ENSMUST00000083424 | 86 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm12580-201 | ENSMUST00000127456 | 1751 nt | TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Zfp280c-202 | ENSMUST00000076635 | 4355 nt | APPRIS P3 TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm13424-201 | ENSMUST00000122301 | 354 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm15327-202 | ENSMUST00000153958 | 467 nt | TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22803-201 | ENSMUST00000158049 | 283 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22328-201 | ENSMUST00000158074 | 112 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28076-201 | ENSMUST00000188337 | 410 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm36891-201 | ENSMUST00000191995 | 655 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm42647-201 | ENSMUST00000195939 | 459 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm44085-201 | ENSMUST00000205056 | 372 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm45005-201 | ENSMUST00000206640 | 157 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr1370-201 | ENSMUST00000058168 | 951 nt | APPRIS P1 BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm26329-201 | ENSMUST00000093723 | 110 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm43753-201 | ENSMUST00000196539 | 3309 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr1318-202 | ENSMUST00000214063 | 3556 nt | APPRIS P1 TSL 5 BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23950-201 | ENSMUST00000104026 | 129 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24172-201 | ENSMUST00000104127 | 117 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23836-201 | ENSMUST00000104434 | 129 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm13672-201 | ENSMUST00000117554 | 459 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm15896-201 | ENSMUST00000118045 | 440 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm11794-201 | ENSMUST00000119446 | 237 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm26275-201 | ENSMUST00000157101 | 268 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir1942-201 | ENSMUST00000157274 | 63 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24601-201 | ENSMUST00000157970 | 143 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25333-201 | ENSMUST00000158035 | 246 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22727-201 | ENSMUST00000158090 | 116 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24729-201 | ENSMUST00000158225 | 137 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23548-201 | ENSMUST00000158963 | 106 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Vmn2r-ps65-201 | ENSMUST00000173309 | 220 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Cypt14-201 | ENSMUST00000179096 | 508 nt | APPRIS P1 TSL 1 (best) BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir7026-201 | ENSMUST00000184384 | 67 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | 1700010I02Rik-202 | ENSMUST00000188525 | 430 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29665-201 | ENSMUST00000191457 | 528 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm37377-201 | ENSMUST00000191733 | 304 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm2077-201 | ENSMUST00000195017 | 319 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Igkv14-118-1-201 | ENSMUST00000198645 | 334 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC164297.3-201 | ENSMUST00000224238 | 94 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC154262.1-201 | ENSMUST00000225976 | 286 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC168062.3-201 | ENSMUST00000227025 | 165 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm10222-201 | ENSMUST00000088336 | 294 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Zfy2-201 | ENSMUST00000115891 | 2816 nt | APPRIS P1 TSL 1 (best) BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm37895-201 | ENSMUST00000192448 | 4550 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr785-201 | ENSMUST00000204402 | 2014 nt | APPRIS P1 TSL 5 BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Adgrg4-205 | ENSMUST00000154818 | 8857 nt | APPRIS ALT2 TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23060-201 | ENSMUST00000102345 | 109 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22494-201 | ENSMUST00000104495 | 128 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm12647-201 | ENSMUST00000118977 | 265 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm14792-201 | ENSMUST00000119725 | 258 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23557-201 | ENSMUST00000157820 | 138 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24885-201 | ENSMUST00000158783 | 270 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24177-201 | ENSMUST00000158927 | 131 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir6346-201 | ENSMUST00000183982 | 81 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28650-201 | ENSMUST00000188413 | 411 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm37338-201 | ENSMUST00000191986 | 127 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23370-202 | ENSMUST00000197008 | 129 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir376a-201 | ENSMUST00000197584 | 68 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm43914-201 | ENSMUST00000203592 | 594 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm44960-201 | ENSMUST00000207403 | 141 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm45315-201 | ENSMUST00000209283 | 333 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm45313-201 | ENSMUST00000210584 | 178 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC126267.1-201 | ENSMUST00000214282 | 284 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC122194.1-201 | ENSMUST00000220549 | 293 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC124524.1-201 | ENSMUST00000225833 | 181 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23845-201 | ENSMUST00000083834 | 152 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25257-201 | ENSMUST00000083907 | 110 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr1316-201 | ENSMUST00000099596 | 945 nt | APPRIS P2 BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Vmn2r70-201 | ENSMUST00000168230 | 2565 nt | APPRIS P1 TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Arhgap5-202 | ENSMUST00000217820 | 2332 nt | TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr1442-202 | ENSMUST00000207341 | 3126 nt | APPRIS P1 TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa4 | P06798 | Olfr1442-204 | ENSMUST00000208657 | 3148 nt | APPRIS P1 TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa4 | P06798 | Olfr1496-202 | ENSMUST00000209137 | 2394 nt | APPRIS ALT1 TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa4 | P06798 | Gm43663-201 | ENSMUST00000198643 | 1505 nt | BASIC | 2.08 | □□□□□ -2.08 | | |