| Hoxa4 | P06798 | Gm5937-201 | ENSMUST00000119715 | 643 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm13433-201 | ENSMUST00000121701 | 240 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm14402-201 | ENSMUST00000122217 | 508 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25113-201 | ENSMUST00000157185 | 143 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm26102-201 | ENSMUST00000157251 | 284 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24085-201 | ENSMUST00000175172 | 116 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Obox3-ps7-201 | ENSMUST00000176465 | 410 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23141-201 | ENSMUST00000178682 | 94 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm27402-201 | ENSMUST00000183890 | 120 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir195b-201 | ENSMUST00000184814 | 97 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29147-201 | ENSMUST00000186846 | 315 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29227-201 | ENSMUST00000187139 | 315 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29034-201 | ENSMUST00000188099 | 315 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29140-201 | ENSMUST00000190187 | 476 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28160-201 | ENSMUST00000191229 | 315 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm37129-201 | ENSMUST00000195791 | 315 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr1304-ps1-201 | ENSMUST00000208032 | 189 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr1421-ps1-201 | ENSMUST00000208900 | 208 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | CT485612.4-201 | ENSMUST00000223405 | 250 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25130-201 | ENSMUST00000082650 | 156 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25856-201 | ENSMUST00000082786 | 75 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Rpl31-ps1-201 | ENSMUST00000085128 | 378 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm45557-201 | ENSMUST00000210004 | 1651 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Tlr8-201 | ENSMUST00000049023 | 3158 nt | APPRIS P1 TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22658-201 | ENSMUST00000104196 | 155 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Cypt15-201 | ENSMUST00000115114 | 519 nt | APPRIS P1 TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm15002-201 | ENSMUST00000118406 | 452 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm15029-201 | ENSMUST00000119742 | 199 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm14069-201 | ENSMUST00000120815 | 229 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm15223-201 | ENSMUST00000120989 | 826 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm12956-201 | ENSMUST00000122184 | 414 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm14298-201 | ENSMUST00000139032 | 237 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm16356-201 | ENSMUST00000143300 | 169 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm16354-201 | ENSMUST00000155376 | 150 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22083-201 | ENSMUST00000157586 | 102 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24769-201 | ENSMUST00000158506 | 129 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir7017-201 | ENSMUST00000184894 | 62 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29512-201 | ENSMUST00000185544 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28110-201 | ENSMUST00000185782 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28838-201 | ENSMUST00000186338 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29057-201 | ENSMUST00000186468 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29661-201 | ENSMUST00000186781 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28737-201 | ENSMUST00000186808 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29118-201 | ENSMUST00000186908 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28433-201 | ENSMUST00000187085 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29635-201 | ENSMUST00000187221 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28759-201 | ENSMUST00000187621 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28831-201 | ENSMUST00000187739 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28200-201 | ENSMUST00000187778 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29026-201 | ENSMUST00000187787 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28752-201 | ENSMUST00000188340 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28797-201 | ENSMUST00000188543 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28855-201 | ENSMUST00000188680 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29378-201 | ENSMUST00000188723 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28569-201 | ENSMUST00000188748 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28120-201 | ENSMUST00000188812 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28369-201 | ENSMUST00000188993 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29037-201 | ENSMUST00000189092 | 313 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28909-201 | ENSMUST00000189406 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28705-201 | ENSMUST00000189548 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28861-201 | ENSMUST00000189681 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29180-201 | ENSMUST00000190003 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28939-201 | ENSMUST00000190351 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm28223-201 | ENSMUST00000190469 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29575-201 | ENSMUST00000190597 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29092-201 | ENSMUST00000190768 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Ttn-225 | ENSMUST00000190813 | 300 nt | TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm29469-201 | ENSMUST00000191448 | 315 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm43529-201 | ENSMUST00000199178 | 412 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm2511-201 | ENSMUST00000205521 | 457 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm45207-201 | ENSMUST00000207469 | 145 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm45355-201 | ENSMUST00000211342 | 296 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Calml4-204 | ENSMUST00000214633 | 394 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC126440.1-201 | ENSMUST00000227098 | 349 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC133156.1-202 | ENSMUST00000227284 | 363 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir322-201 | ENSMUST00000083484 | 95 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm10203-201 | ENSMUST00000087348 | 198 nt | APPRIS P1 TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | A630081D01Rik-201 | ENSMUST00000195842 | 1833 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm43540-201 | ENSMUST00000196320 | 3848 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Olfr1109-202 | ENSMUST00000214636 | 2483 nt | APPRIS P1 TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Vmn1r29-204 | ENSMUST00000228038 | 4520 nt | APPRIS P1 BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24098-201 | ENSMUST00000102075 | 109 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm25381-201 | ENSMUST00000102078 | 109 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir344e-201 | ENSMUST00000104677 | 66 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm13725-201 | ENSMUST00000122139 | 207 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22554-201 | ENSMUST00000157798 | 147 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22159-201 | ENSMUST00000158412 | 130 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm24487-201 | ENSMUST00000178017 | 63 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir6997-201 | ENSMUST00000184313 | 71 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir6383-201 | ENSMUST00000184545 | 116 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm27694-201 | ENSMUST00000184740 | 86 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm6059-201 | ENSMUST00000196903 | 340 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir7661-201 | ENSMUST00000197023 | 61 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC122225.1-201 | ENSMUST00000215641 | 369 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC154271.1-201 | ENSMUST00000224780 | 383 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | AC173482.4-201 | ENSMUST00000225096 | 348 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm26447-201 | ENSMUST00000082448 | 129 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm23055-201 | ENSMUST00000082805 | 94 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Gm22685-201 | ENSMUST00000082848 | 106 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| Hoxa4 | P06798 | Mir452-201 | ENSMUST00000093629 | 85 nt | BASIC | 2.13 | □□□□□ -2.07 | | |