Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Olfr186-203ENSMUST00000216415 2323 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Rnf40Q3U319 Gm44601-201ENSMUST00000206678 2720 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Rnf40Q3U319 Abca5-201ENSMUST00000043961 8231 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Rnf40Q3U319 Rmi1-202ENSMUST00000224479 4212 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm22713-201ENSMUST00000116895 130 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm14923-201ENSMUST00000118270 155 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm13868-201ENSMUST00000122411 294 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm24507-201ENSMUST00000157683 134 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm26466-201ENSMUST00000179615 79 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Xrn1-202ENSMUST00000185633 10256 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm44564-201ENSMUST00000207985 180 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm45392-201ENSMUST00000210441 214 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm24625-201ENSMUST00000082622 130 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Erbb4-201ENSMUST00000119142 11782 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
Rnf40Q3U319 Zfp458-201ENSMUST00000045969 3488 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Rnf40Q3U319 Gm44434-201ENSMUST00000203918 3745 ntBASIC4.42□□□□□ -1.7
Rnf40Q3U319 Lrrd1-201ENSMUST00000044039 2951 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Rnf40Q3U319 AC153522.2-201ENSMUST00000218389 3853 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm14636-202ENSMUST00000150801 5060 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Rnf40Q3U319 AI314180-203ENSMUST00000107557 4946 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Pde1a-205ENSMUST00000102654 4122 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Zfp850-203ENSMUST00000180502 6163 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm22778-201ENSMUST00000104090 128 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm22031-201ENSMUST00000116945 126 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm14303-201ENSMUST00000121320 171 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm13149-201ENSMUST00000122071 339 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm22515-201ENSMUST00000158273 305 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm19620-201ENSMUST00000195972 434 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Mir3068-202ENSMUST00000197755 79 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm45839-201ENSMUST00000209884 399 ntTSL 5 BASIC4.41□□□□□ -1.7
Rnf40Q3U319 AC138401.2-201ENSMUST00000220461 365 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm3338-201ENSMUST00000220982 269 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm23626-201ENSMUST00000082458 133 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Mir208a-201ENSMUST00000083498 83 ntBASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm10217-201ENSMUST00000088080 135 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Neto2-201ENSMUST00000109686 5610 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Kctd12b-201ENSMUST00000039424 4795 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Olfr1012-202ENSMUST00000214255 3115 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Olfr916-203ENSMUST00000214093 3685 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
Rnf40Q3U319 Gm44120-201ENSMUST00000203022 3023 ntBASIC4.4□□□□□ -1.7
Rnf40Q3U319 Vmn1r71-205ENSMUST00000227940 4725 ntAPPRIS P2 BASIC4.4□□□□□ -1.7
Rnf40Q3U319 P2ry10-201ENSMUST00000053375 2888 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Rnf40Q3U319 A930027P06Rik-201ENSMUST00000221298 2975 ntBASIC4.4□□□□□ -1.7
Rnf40Q3U319 Sult1b1-202ENSMUST00000117455 2612 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
Rnf40Q3U319 Igkv3-2-201ENSMUST00000103403 378 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm22281-201ENSMUST00000157198 103 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm25923-201ENSMUST00000158312 138 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm23476-201ENSMUST00000158881 274 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm14435-203ENSMUST00000172025 192 ntTSL 5 BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Trav7-6-202ENSMUST00000184687 275 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm27286-201ENSMUST00000184934 179 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm44358-201ENSMUST00000196301 98 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 1700011L03Rik-201ENSMUST00000210613 608 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
Rnf40Q3U319 CT030687.1-201ENSMUST00000221854 162 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 AC129219.3-201ENSMUST00000223790 196 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm22443-201ENSMUST00000082890 107 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm22741-201ENSMUST00000083438 165 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm14440-201ENSMUST00000098998 192 ntTSL 5 BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm14327-201ENSMUST00000099001 192 ntTSL 5 BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Zfp989-202ENSMUST00000146688 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm14062-201ENSMUST00000134795 4134 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Nap1l1-202ENSMUST00000171797 3926 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Olfr1369-ps1-203ENSMUST00000213922 3930 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Nap1l1-204ENSMUST00000218828 3934 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Gm2093-201ENSMUST00000180518 3526 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Zfp813-ps-201ENSMUST00000186652 2506 ntBASIC4.4□□□□□ -1.71
Rnf40Q3U319 Trpc5os-201ENSMUST00000155206 3585 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Vmn1r81-203ENSMUST00000227973 14002 ntAPPRIS P2 BASIC4.4□□□□□ -1.71
Rnf40Q3U319 Olfr298-204ENSMUST00000217110 3549 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm4788-203ENSMUST00000111989 3187 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm43881-201ENSMUST00000203051 2530 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Olfr788-202ENSMUST00000213222 4747 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Vmn1r185-213ENSMUST00000228676 5199 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Cfh-203ENSMUST00000111977 4100 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm43751-201ENSMUST00000200275 3071 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Olfr1196-203ENSMUST00000216977 4225 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Ighv1-54-201ENSMUST00000103525 377 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm26019-201ENSMUST00000104407 119 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm13737-201ENSMUST00000119793 232 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm26020-201ENSMUST00000122729 183 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm26310-201ENSMUST00000157766 117 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Mog-202ENSMUST00000167275 627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm44474-201ENSMUST00000196525 127 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm43155-201ENSMUST00000202661 494 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm16976-205ENSMUST00000227324 226 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm24031-201ENSMUST00000083930 131 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Gm10491-201ENSMUST00000085330 117 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 Olfr814-202ENSMUST00000213742 3798 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 AC154677.1-201ENSMUST00000227636 2805 ntBASIC4.39□□□□□ -1.71
Rnf40Q3U319 Ddx60-201ENSMUST00000070631 6535 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
Rnf40Q3U319 4932415D10Rik-202ENSMUST00000217661 15111 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
Rnf40Q3U319 Olfr1033-204ENSMUST00000215682 3625 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Rnf40Q3U319 Gm7173-201ENSMUST00000101410 2832 ntAPPRIS P4 TSL 5 BASIC4.38□□□□□ -1.71
Rnf40Q3U319 AC153967.1-201ENSMUST00000219333 3190 ntBASIC4.38□□□□□ -1.71
Rnf40Q3U319 Rpl30-ps9-201ENSMUST00000122265 345 ntBASIC4.38□□□□□ -1.71
Rnf40Q3U319 Gm12854-201ENSMUST00000128518 297 ntBASIC4.38□□□□□ -1.71
Rnf40Q3U319 Mir7031-201ENSMUST00000183860 65 ntBASIC4.38□□□□□ -1.71
Rnf40Q3U319 Mir6371-201ENSMUST00000184470 111 ntBASIC4.38□□□□□ -1.71
Rnf40Q3U319 Gm45080-201ENSMUST00000206648 283 ntBASIC4.38□□□□□ -1.71
Rnf40Q3U319 Supt4b-201ENSMUST00000214434 351 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 76,532 protein–RNA pairs in 82.8 ms