| Hoxa4 | P06798 | Gm24242-201 | ENSMUST00000179440 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24863-201 | ENSMUST00000179499 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25064-201 | ENSMUST00000179535 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26295-201 | ENSMUST00000179690 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23712-201 | ENSMUST00000179713 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22823-201 | ENSMUST00000179754 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22360-201 | ENSMUST00000179775 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24978-201 | ENSMUST00000179782 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24967-201 | ENSMUST00000179791 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25173-201 | ENSMUST00000179794 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24870-201 | ENSMUST00000179897 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22288-201 | ENSMUST00000179904 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22645-201 | ENSMUST00000180010 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24565-201 | ENSMUST00000180099 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23805-201 | ENSMUST00000180129 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23512-201 | ENSMUST00000180237 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25327-201 | ENSMUST00000180263 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26058-201 | ENSMUST00000180294 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22418-201 | ENSMUST00000180326 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm27410-201 | ENSMUST00000183851 | 115 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Mir3069-201 | ENSMUST00000198802 | 65 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Vmn1r-ps13-201 | ENSMUST00000204697 | 134 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm45704-201 | ENSMUST00000212582 | 403 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm2829-201 | ENSMUST00000213121 | 499 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | AC158622.1-201 | ENSMUST00000217107 | 230 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | CT030159.4-201 | ENSMUST00000221966 | 395 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | 4930520P13Rik-201 | ENSMUST00000222622 | 505 nt | TSL 1 (best) BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23629-201 | ENSMUST00000082465 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23924-201 | ENSMUST00000082474 | 108 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22246-201 | ENSMUST00000082478 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22749-201 | ENSMUST00000082490 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22747-201 | ENSMUST00000082495 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22063-201 | ENSMUST00000082560 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23057-201 | ENSMUST00000082801 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26328-201 | ENSMUST00000082821 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26331-201 | ENSMUST00000082824 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24205-201 | ENSMUST00000082953 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25405-201 | ENSMUST00000082973 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22628-201 | ENSMUST00000082988 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26324-201 | ENSMUST00000083073 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24535-201 | ENSMUST00000083140 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26496-201 | ENSMUST00000083150 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23679-201 | ENSMUST00000083161 | 119 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26127-201 | ENSMUST00000083193 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24456-201 | ENSMUST00000083198 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24458-201 | ENSMUST00000083204 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24018-201 | ENSMUST00000083232 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25794-201 | ENSMUST00000083286 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25790-201 | ENSMUST00000083293 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22295-201 | ENSMUST00000083311 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23454-201 | ENSMUST00000083332 | 133 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25127-201 | ENSMUST00000083336 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23650-201 | ENSMUST00000083355 | 70 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25583-201 | ENSMUST00000083413 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25577-201 | ENSMUST00000083414 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24414-201 | ENSMUST00000083434 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24861-201 | ENSMUST00000083459 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24803-201 | ENSMUST00000083693 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23103-201 | ENSMUST00000083725 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22580-201 | ENSMUST00000083727 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24260-201 | ENSMUST00000083741 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm23732-201 | ENSMUST00000083751 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22682-201 | ENSMUST00000083854 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25869-201 | ENSMUST00000083855 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24693-201 | ENSMUST00000083885 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26317-201 | ENSMUST00000083894 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm25937-201 | ENSMUST00000083912 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22352-201 | ENSMUST00000083917 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm24448-201 | ENSMUST00000083979 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22798-201 | ENSMUST00000083992 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm26427-201 | ENSMUST00000093648 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22886-201 | ENSMUST00000093714 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm22170-201 | ENSMUST00000097247 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| Hoxa4 | P06798 | Gm37642-201 | ENSMUST00000193166 | 1735 nt | BASIC | 2.28 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm7173-205 | ENSMUST00000197180 | 9412 nt | APPRIS ALT2 TSL 5 BASIC | 2.28 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm15101-201 | ENSMUST00000178818 | 1502 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Cyp3a41a-201 | ENSMUST00000094111 | 2060 nt | APPRIS P1 TSL 1 (best) BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm37331-201 | ENSMUST00000192367 | 3375 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Trav16-201 | ENSMUST00000103667 | 420 nt | APPRIS P1 BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm23551-201 | ENSMUST00000116852 | 121 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm15936-201 | ENSMUST00000118706 | 460 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm14588-201 | ENSMUST00000119895 | 172 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm14919-201 | ENSMUST00000120839 | 390 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm15167-201 | ENSMUST00000121997 | 187 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm12785-201 | ENSMUST00000122052 | 172 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm23886-201 | ENSMUST00000122684 | 313 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Defb44-ps-201 | ENSMUST00000126871 | 219 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm13096-201 | ENSMUST00000127752 | 251 nt | TSL 5 BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm13601-201 | ENSMUST00000142314 | 404 nt | TSL 3 BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Mir1927-201 | ENSMUST00000158579 | 109 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm22891-201 | ENSMUST00000158641 | 164 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm22668-201 | ENSMUST00000158716 | 260 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Nron-204 | ENSMUST00000158971 | 370 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Lce6a-202 | ENSMUST00000170676 | 485 nt | APPRIS P1 TSL 1 (best) BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Vmn2r-ps33-201 | ENSMUST00000175691 | 904 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm23190-201 | ENSMUST00000180307 | 64 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm28169-201 | ENSMUST00000190342 | 345 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm43722-201 | ENSMUST00000196054 | 124 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm9402-201 | ENSMUST00000196849 | 388 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| Hoxa4 | P06798 | Gm44858-201 | ENSMUST00000207360 | 154 nt | BASIC | 2.27 | □□□□□ -2.05 | | |