Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Prpf40aQ9R1C7 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Prpf40aQ9R1C7 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Prpf40aQ9R1C7 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Prpf40aQ9R1C7 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.77■□□□□ 0.59
Prpf40aQ9R1C7 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Timm23-208ENSMUST00000226683 750 ntBASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Prpf40aQ9R1C7 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Prpf40aQ9R1C7 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Odf3b-204ENSMUST00000227834 930 ntBASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Prpf40aQ9R1C7 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Gm24841-201ENSMUST00000158676 357 ntBASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms