Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 AC151286.1-201ENSMUST00000198489 145 ntBASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Chchd1-203ENSMUST00000224633 557 ntBASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col4a4Q9QZR9 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col4a4Q9QZR9 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col4a4Q9QZR9 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Gm4459-201ENSMUST00000118750 468 ntBASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Gm14057-201ENSMUST00000120631 482 ntBASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Gm45683-201ENSMUST00000210825 1247 ntBASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col4a4Q9QZR9 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Gm26308-201ENSMUST00000157768 69 ntBASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Gm6089-201ENSMUST00000197666 938 ntBASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 AC158982.1-201ENSMUST00000228377 901 ntBASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col4a4Q9QZR9 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Col4a4Q9QZR9 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms