Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Rpap3Q9D706 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpap3Q9D706 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpap3Q9D706 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Rpap3Q9D706 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpap3Q9D706 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Rpap3Q9D706 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.77■□□□□ 0.6
Rpap3Q9D706 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpap3Q9D706 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.77■□□□□ 0.59
Rpap3Q9D706 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Rpap3Q9D706 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.76■□□□□ 0.59
Rpap3Q9D706 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rpap3Q9D706 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Gm11336-201ENSMUST00000118168 334 ntBASIC18.75■□□□□ 0.59
Rpap3Q9D706 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.75■□□□□ 0.59
Rpap3Q9D706 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Rpap3Q9D706 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.74■□□□□ 0.59
Rpap3Q9D706 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.74■□□□□ 0.59
Rpap3Q9D706 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.74■□□□□ 0.59
Rpap3Q9D706 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rpap3Q9D706 Phf7-203ENSMUST00000226565 1971 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms