Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ushbp1Q8R370 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ushbp1Q8R370 Gm16499-203ENSMUST00000204633 2177 ntBASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Gm24841-201ENSMUST00000158676 357 ntBASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Ushbp1Q8R370 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Gm23634-201ENSMUST00000175071 91 ntBASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ushbp1Q8R370 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Ushbp1Q8R370 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.08■□□□□ 0.64
Ushbp1Q8R370 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ushbp1Q8R370 Gm18959-201ENSMUST00000208954 655 ntBASIC19.08■□□□□ 0.64
Ushbp1Q8R370 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.08■□□□□ 0.64
Ushbp1Q8R370 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ushbp1Q8R370 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ushbp1Q8R370 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.08■□□□□ 0.64
Ushbp1Q8R370 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Ushbp1Q8R370 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Gm27741-201ENSMUST00000185060 237 ntBASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ushbp1Q8R370 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms